Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18c17
         (804 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p...    30   0.44 
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    30   0.44 
SPAC6G9.01c |||conserved protein|Schizosaccharomyces pombe|chr 1...    30   0.44 
SPAC22F8.12c |shf1||small histone ubiquitination factor Shf1|Sch...    28   1.4  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    27   2.4  
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom...    27   4.1  
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    27   4.1  
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb...    26   5.5  
SPAC57A10.11c |tim40||TIM22 inner membrane protein import comple...    26   7.2  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    26   7.2  
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch...    25   9.5  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   9.5  

>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 473

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = -3

Query: 706 LQQQQQADREDRGAQRKAEPSRPSPEHNSPQHSASTTSNEVKTTPESKSVDPSN 545
           LQQ+Q   ++ + AQ++  P    P    P H   +   + KTTP+ + + PS+
Sbjct: 303 LQQRQMQMQQQQKAQQQQSPKAQQP----PAHLVQSAPVQRKTTPKIQRLPPSS 352


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -1

Query: 492  LNNFTGECFK-GLKYVIFLILIMFATFIFYFVPVTFSV 382
            L N T  C + G+K +  L +  F  F++YF+P  FS+
Sbjct: 1098 LENITNWCSESGIKSLELLPVCCFLRFMYYFLPTVFSL 1135


>SPAC6G9.01c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 95

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 721 ANVTSLQQQQQADREDRGAQRKAEPSRPSPEHN 623
           AN  S   + +A    +GA+ K+ PSRP P +N
Sbjct: 15  ANEKSNDSKSEAKAPKKGAKTKSTPSRPKPTNN 47


>SPAC22F8.12c |shf1||small histone ubiquitination factor
           Shf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 165

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = -3

Query: 709 SLQQQQQADREDRGAQRKAEPSRPSPEHNSPQHSASTTSNEVKTTPESKSVD 554
           S Q   Q  +  R +      S  S EHNSP H    ++N  + +  + S D
Sbjct: 37  SRQSYHQRTKTPRSSYDSPSSSTNSKEHNSPYHYRVPSNNSTRASFGAASTD 88


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/58 (24%), Positives = 28/58 (48%)
 Frame = -3

Query: 745 ALLAALHLANVTSLQQQQQADREDRGAQRKAEPSRPSPEHNSPQHSASTTSNEVKTTP 572
           A + A+  ++  SLQ QQ   +    ++     + P P +N  +H +ST++     +P
Sbjct: 73  ASIDAVASSSNVSLQSQQPLSKPVVSSKPNQTTAMPPPSNNPSRHVSSTSNKPAAVSP 130


>SPCPJ732.01 |vps5||retromer complex subunit
           Vps5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 652 EPSRPSPEHNSPQHSASTTSNEVKTTPESKSVD 554
           EPS    E  SP   AS     + T+P  +SV+
Sbjct: 31  EPSAEGVEEESPNVQASPPKTHIYTSPRKRSVN 63


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = -3

Query: 688 ADREDRGAQRKAEPSRPSPE---HNSPQHSASTTSNEVKT 578
           A RED+    K +P +P PE   H  P   A   S+ VKT
Sbjct: 278 AHREDKKRSSKPQPLQPDPETVIHLVPTVLAGDKSSVVKT 317


>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 368

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 646 SRPSPEHNSPQHSASTTSNEVKTTPESKSVDPSN 545
           SRP    ++P+ +AS   N   + PE K   PS+
Sbjct: 73  SRPKTSTSTPKSAASPAPNPPASVPEKKVEAPSS 106


>SPAC57A10.11c |tim40||TIM22 inner membrane protein import complex
           subunit Tim40|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 313

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -3

Query: 706 LQQQQQADREDRGAQRKAEPSRPSPEHNSPQHSASTTSN 590
           + Q    + E+  A+   +PS  S E+N PQ   S  ++
Sbjct: 250 IYQDMVGESEEEDAETNEKPSTTSDENNQPQSPPSDNAS 288


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
 Frame = -3

Query: 649 PSRPSPEHNS----PQHSASTTSNEVKTTPESKSV 557
           PS+P+P + S    PQ S ++ ++   TTP+S SV
Sbjct: 450 PSKPAPVNASRPMMPQQSNNSEASIPSTTPQSPSV 484


>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 609

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 77  DSIRQSFDKKLTS*XQDNAGTTRYTFIVARHLIQNISV 190
           DSI  S D +L+   QD+        ++  H++ NISV
Sbjct: 198 DSILPSNDPQLSKWNQDSRNDAMENTLLVSHVLPNISV 235


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
 Frame = -3

Query: 742 LLAALHLANVTSLQQQQQADREDRGAQRKAEPSRP---SPEHNSPQHSASTTSNEVKTTP 572
           LL   H A+    +     +  DR   +K    R    +P  N+ + +++  SN   TTP
Sbjct: 399 LLIKEHNADARRFRSGSDVNNVDRKCVKKQMNYREESHTPHGNTTRKTSTPVSNNRPTTP 458

Query: 571 ESKSV 557
           E ++V
Sbjct: 459 EQQAV 463


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,584,271
Number of Sequences: 5004
Number of extensions: 46496
Number of successful extensions: 155
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)