Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18c17
         (804 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043725-1|AAD21791.1| 1099|Homo sapiens PHD-finger protein prot...    35   0.30 
L27213-1|AAB05850.1|  932|Homo sapiens anion exchange protein pr...    32   2.1  
AF488549-1|AAO49469.1|  890|Homo sapiens hyperpolarization activ...    31   3.7  
AF064876-1|AAC39759.1|  749|Homo sapiens ion channel BCNG-1 prot...    31   3.7  
Y18448-1|CAA77176.1| 3851|Homo sapiens Bassoon protein protein.        31   6.4  
BC117319-1|AAI17320.1|  257|Homo sapiens TPRXL protein protein.        31   6.4  
AK092426-1|BAC03887.1|  258|Homo sapiens protein ( Homo sapiens ...    31   6.4  
AF052224-1|AAC83555.1| 3926|Homo sapiens neuronal double zinc fi...    31   6.4  

>AF043725-1|AAD21791.1| 1099|Homo sapiens PHD-finger protein protein.
          Length = 1099

 Score = 35.1 bits (77), Expect = 0.30
 Identities = 21/62 (33%), Positives = 31/62 (50%)
 Frame = -3

Query: 751  VTALLAALHLANVTSLQQQQQADREDRGAQRKAEPSRPSPEHNSPQHSASTTSNEVKTTP 572
            V ++   L  A     QQ++Q +R+ +  +RK  P+  SP   S   SAST +    TTP
Sbjct: 924  VASIETGLAAAAAKLSQQEEQKNRKKKNTKRKPAPNTASPSI-STSASASTGTTSASTTP 982

Query: 571  ES 566
             S
Sbjct: 983  AS 984


>L27213-1|AAB05850.1|  932|Homo sapiens anion exchange protein
           protein.
          Length = 932

 Score = 32.3 bits (70), Expect = 2.1
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
 Frame = -1

Query: 507 CTISKLNNFTGECFKGLKYVIFLILIMFATFIF---YFVPVTFSVF*SKIKLCINFVISS 337
           C    L   TG  + GL  V+F++ ++ A FIF   Y  P+T  +F       I+ +   
Sbjct: 486 CRAQDLEYLTGRVWVGLWLVVFVLALVAAEFIFLVRYISPLTQEIF----AFLISLIFIY 541

Query: 336 QNIGKLKKTKTE 301
           +   KL K  TE
Sbjct: 542 ETFYKLYKVFTE 553


>AF488549-1|AAO49469.1|  890|Homo sapiens hyperpolarization
           activated cyclic nucleotide-gated potassium channel
           protein.
          Length = 890

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = -3

Query: 721 ANVTSLQQQQQADREDRGAQRKAEPSRPSPEHNSPQHSASTTSNEVKTTPES 566
           A+  SL QQQ   +  +    + +P +PSP+  +P   +ST  NEV  + ++
Sbjct: 724 ASQLSLMQQQPQQQVQQSQPPQTQPQQPSPQPQTP--GSSTPKNEVHKSTQA 773


>AF064876-1|AAC39759.1|  749|Homo sapiens ion channel BCNG-1
           protein.
          Length = 749

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = -3

Query: 721 ANVTSLQQQQQADREDRGAQRKAEPSRPSPEHNSPQHSASTTSNEVKTTPES 566
           A+  SL QQQ   +  +    + +P +PSP+  +P   +ST  NEV  + ++
Sbjct: 603 ASQLSLMQQQPQQQVQQSQPPQTQPQQPSPQPQTP--GSSTPKNEVHKSTQA 652


>Y18448-1|CAA77176.1| 3851|Homo sapiens Bassoon protein protein.
          Length = 3851

 Score = 30.7 bits (66), Expect = 6.4
 Identities = 17/57 (29%), Positives = 31/57 (54%)
 Frame = -3

Query: 715  VTSLQQQQQADREDRGAQRKAEPSRPSPEHNSPQHSASTTSNEVKTTPESKSVDPSN 545
            + S  ++ + D+E+  AQR+ E S+  P + SP   AS T  E++   E + +  S+
Sbjct: 992  IRSTARKTRRDKEELRAQRRRERSKTPPSNLSPIEDASPT-EELRQAAEMEELHRSS 1047


>BC117319-1|AAI17320.1|  257|Homo sapiens TPRXL protein protein.
          Length = 257

 Score = 30.7 bits (66), Expect = 6.4
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -3

Query: 646 SRPSPEHNSPQHSASTTSNEVKTTPESKSVDPSN 545
           S PSP  +SP  S+S+TS+   ++P S S   S+
Sbjct: 198 SSPSPRSSSPSSSSSSTSSPSTSSPSSSSPSSSS 231


>AK092426-1|BAC03887.1|  258|Homo sapiens protein ( Homo sapiens
           cDNA FLJ35107 fis, clone PLACE6006871, moderately
           similar to SUPPRESSOR PROTEIN SRP40. ).
          Length = 258

 Score = 30.7 bits (66), Expect = 6.4
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -3

Query: 646 SRPSPEHNSPQHSASTTSNEVKTTPESKSVDPSN 545
           S PSP  +SP  S+S+TS+   ++P S S   S+
Sbjct: 199 SSPSPRSSSPSSSSSSTSSPSTSSPSSSSPSSSS 232


>AF052224-1|AAC83555.1| 3926|Homo sapiens neuronal double zinc finger
            protein protein.
          Length = 3926

 Score = 30.7 bits (66), Expect = 6.4
 Identities = 17/57 (29%), Positives = 31/57 (54%)
 Frame = -3

Query: 715  VTSLQQQQQADREDRGAQRKAEPSRPSPEHNSPQHSASTTSNEVKTTPESKSVDPSN 545
            + S  ++ + D+E+  AQR+ E S+  P + SP   AS T  E++   E + +  S+
Sbjct: 1067 IRSTARKTRRDKEELRAQRRRERSKTPPSNLSPIEDASPT-EELRQAAEMEELHRSS 1122


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,883,341
Number of Sequences: 237096
Number of extensions: 1467506
Number of successful extensions: 4655
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4558
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9924838204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)