Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18c17
         (804 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66495-4|CAA91271.1|  954|Caenorhabditis elegans Hypothetical pr...    32   0.42 
AF039715-5|AAB96730.1|  391|Caenorhabditis elegans Hypothetical ...    30   1.7  
Z81118-10|CAB61029.1|  657|Caenorhabditis elegans Hypothetical p...    29   2.9  
Z77668-2|CAB61021.1|  657|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AJ000538-1|CAA04171.1|  657|Caenorhabditis elegans GluClalpha2A ...    29   2.9  
AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a...    29   2.9  
Z22179-1|CAA80169.1|  254|Caenorhabditis elegans Hypothetical pr...    29   3.9  
AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans Prion-like-(q...    29   3.9  
Z77658-2|CAB01156.1|  457|Caenorhabditis elegans Hypothetical pr...    29   5.1  
Z93395-2|CAB07705.1|  905|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z83112-5|CAB05541.1|  905|Caenorhabditis elegans Hypothetical pr...    28   6.8  
U29244-15|AAC71096.2|  471|Caenorhabditis elegans Hypothetical p...    28   6.8  
U41015-11|AAM54187.1|  740|Caenorhabditis elegans Homeodomain in...    28   9.0  
U41015-10|AAA82316.1|  821|Caenorhabditis elegans Homeodomain in...    28   9.0  
U41015-9|AAM54186.1|  846|Caenorhabditis elegans Homeodomain int...    28   9.0  

>Z66495-4|CAA91271.1|  954|Caenorhabditis elegans Hypothetical
           protein C36A4.5 protein.
          Length = 954

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 16/49 (32%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
 Frame = -3

Query: 688 ADREDRGAQRKAEPSRPSPEHNSPQHSA-STTSNEVKTTPESKSVDPSN 545
           A ++  G  ++A PS+P+   ++P+ +A ++TS+   T PE+   DPS+
Sbjct: 417 AQKKVAGKVQRAAPSKPASAVSAPKATAPASTSSAPATAPEASRRDPSD 465


>AF039715-5|AAB96730.1|  391|Caenorhabditis elegans Hypothetical
           protein R06A10.4 protein.
          Length = 391

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
 Frame = -3

Query: 781 SGIELDVRRYVTALLAALHLANVTS--LQQQQQADREDRGAQRKAEPSRPSPEHNSPQHS 608
           SG EL  +++V +LL    +  ++S    + +    E     +   P+RP+ E+NS Q +
Sbjct: 290 SGSEL-AKQFVDSLLETNSVERLSSSAAMKHEWLTGERPSTTQSRPPTRPTSEYNSMQRT 348

Query: 607 ASTTS-NEVKTTPESKSVDP 551
            ST S   V  +     VDP
Sbjct: 349 KSTRSIRSVTRSDHGHRVDP 368


>Z81118-10|CAB61029.1|  657|Caenorhabditis elegans Hypothetical
           protein R11G10.1a protein.
          Length = 657

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -3

Query: 679 EDRGAQRKAEPSRPSPEHNSPQHSASTTSNEVKTTPESKSVDPSN 545
           E+ G+   AE    SPE   P  S  TT  +  TTPE  + D S+
Sbjct: 152 EENGSD--AEEEEESPEKVEPATSTITTEAQTTTTPEEVTQDVSD 194


>Z77668-2|CAB61021.1|  657|Caenorhabditis elegans Hypothetical
           protein R11G10.1a protein.
          Length = 657

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -3

Query: 679 EDRGAQRKAEPSRPSPEHNSPQHSASTTSNEVKTTPESKSVDPSN 545
           E+ G+   AE    SPE   P  S  TT  +  TTPE  + D S+
Sbjct: 152 EENGSD--AEEEEESPEKVEPATSTITTEAQTTTTPEEVTQDVSD 194


>AJ000538-1|CAA04171.1|  657|Caenorhabditis elegans GluClalpha2A
           protein protein.
          Length = 657

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -3

Query: 679 EDRGAQRKAEPSRPSPEHNSPQHSASTTSNEVKTTPESKSVDPSN 545
           E+ G+   AE    SPE   P  S  TT  +  TTPE  + D S+
Sbjct: 152 EENGSD--AEEEEESPEKVEPATSTITTEAQTTTTPEEVTQDVSD 194


>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 192 protein.
          Length = 2957

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = -3

Query: 703 QQQQQADREDRGAQRKAEPSRPSPEHNSPQHSASTTSNEVKTTPESKSV 557
           QQQQQ  +    A   A  +     H  P    S+ SN++ + P S  V
Sbjct: 353 QQQQQQQQAAAAAAAAAAAASAGGHHQGPPPPTSSQSNQIPSNPNSVPV 401


>Z22179-1|CAA80169.1|  254|Caenorhabditis elegans Hypothetical
           protein F58A4.1 protein.
          Length = 254

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -3

Query: 712 TSLQQQQQADREDRGAQRKAEPSRPSPEHNSPQHSASTTSNEVKTTPESKS 560
           TS+     +   +R  +   E   P P H+SP  S ST+++   +T  S+S
Sbjct: 66  TSISTSTVSTTPERLTKPYEETDTPIPTHSSPSTSTSTSTSTSTSTSTSRS 116


>AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 85
           protein.
          Length = 2203

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/46 (26%), Positives = 25/46 (54%)
 Frame = -3

Query: 703 QQQQQADREDRGAQRKAEPSRPSPEHNSPQHSASTTSNEVKTTPES 566
           QQQQQ  +  +  QR+   ++P P+H  P  +++    ++++   S
Sbjct: 129 QQQQQQQQPVQQIQRQQPIAQPIPQHTIPPSTSNQFQQQIQSAASS 174


>Z77658-2|CAB01156.1|  457|Caenorhabditis elegans Hypothetical
           protein F14D7.2 protein.
          Length = 457

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -3

Query: 700 QQQQADREDRGAQRKAEPSRPSPEHNSPQHSAS 602
           + + +  +D+  +++ E S  SPEH SP+ S S
Sbjct: 51  ESESSAHDDKVIKKQPETSSSSPEHRSPRRSKS 83


>Z93395-2|CAB07705.1|  905|Caenorhabditis elegans Hypothetical
           protein ZC101.1 protein.
          Length = 905

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = -3

Query: 700 QQQQADREDRGAQRKAEPSRPSPEHNSPQHSA 605
           ++QQ +R+ +  Q++A+    + +H+S QH A
Sbjct: 667 ERQQQERQQQDRQQQAQQHHQAQQHHSQQHPA 698


>Z83112-5|CAB05541.1|  905|Caenorhabditis elegans Hypothetical
           protein ZC101.1 protein.
          Length = 905

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = -3

Query: 700 QQQQADREDRGAQRKAEPSRPSPEHNSPQHSA 605
           ++QQ +R+ +  Q++A+    + +H+S QH A
Sbjct: 667 ERQQQERQQQDRQQQAQQHHQAQQHHSQQHPA 698


>U29244-15|AAC71096.2|  471|Caenorhabditis elegans Hypothetical
           protein ZK1248.15 protein.
          Length = 471

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 10/72 (13%)
 Frame = -3

Query: 766 DVRRYVTALLAALHLANVTSL------QQQQQADREDRGAQRKAEPS----RPSPEHNSP 617
           DV     AL   LH+  V S       +++QQ D +   + RK+  S        EH++ 
Sbjct: 282 DVNLSNKALTHDLHVETVKSFMDTIHGRKKQQTDSDQLNSSRKSSNSDRRQTTRKEHHAN 341

Query: 616 QHSASTTSNEVK 581
            HS   TSN++K
Sbjct: 342 SHSNKYTSNDIK 353


>U41015-11|AAM54187.1|  740|Caenorhabditis elegans Homeodomain
           interacting proteinkinase protein 1, isoform c protein.
          Length = 740

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = -3

Query: 703 QQQQQADREDR--GAQRKAEPSRPSPEHNSPQHSASTTSNE 587
           QQQQQA R         K +P    P+ NSP  S  T S++
Sbjct: 614 QQQQQAQRAQSMINGNVKVKPLAAQPKKNSPAPSVITLSSD 654


>U41015-10|AAA82316.1|  821|Caenorhabditis elegans Homeodomain
           interacting proteinkinase protein 1, isoform a protein.
          Length = 821

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = -3

Query: 703 QQQQQADREDR--GAQRKAEPSRPSPEHNSPQHSASTTSNE 587
           QQQQQA R         K +P    P+ NSP  S  T S++
Sbjct: 695 QQQQQAQRAQSMINGNVKVKPLAAQPKKNSPAPSVITLSSD 735


>U41015-9|AAM54186.1|  846|Caenorhabditis elegans Homeodomain
           interacting proteinkinase protein 1, isoform b protein.
          Length = 846

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = -3

Query: 703 QQQQQADREDR--GAQRKAEPSRPSPEHNSPQHSASTTSNE 587
           QQQQQA R         K +P    P+ NSP  S  T S++
Sbjct: 720 QQQQQAQRAQSMINGNVKVKPLAAQPKKNSPAPSVITLSSD 760


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,135,499
Number of Sequences: 27780
Number of extensions: 262001
Number of successful extensions: 1034
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)