Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18c17
         (804 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        26   0.47 
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    24   1.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.9  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   4.4  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 25.8 bits (54), Expect = 0.47
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = -3

Query: 640 PSPEHNSPQHSAS--TTSNEVKTT 575
           PSP  +SPQHS S  +TS   +TT
Sbjct: 62  PSPTGSSPQHSGSSASTSPAARTT 85


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 727 HLANVTSLQQQQQADREDRGAQRKAE 650
           H   VTS QQQQQ  ++ +  Q++ +
Sbjct: 82  HSDRVTSQQQQQQQQQQQQDQQQQQQ 107


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 9/41 (21%), Positives = 18/41 (43%)
 Frame = -3

Query: 703  QQQQQADREDRGAQRKAEPSRPSPEHNSPQHSASTTSNEVK 581
            QQQQQ  ++ +   ++ +  +P P+    Q        + K
Sbjct: 1508 QQQQQQQQQPQQQSQQPQQQQPQPQQQQQQQQQQQPQQQQK 1548



 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = -3

Query: 703  QQQQQADREDRGAQRKAEPSRPSPEHNSPQ 614
            QQQQ   ++ +  Q++ +     P+   PQ
Sbjct: 1501 QQQQPQQQQQQQQQQQPQQQSQQPQQQQPQ 1530


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -3

Query: 706 LQQQQQADREDRGAQRKAEPS 644
           L+  + +D+E+R AQ+  +PS
Sbjct: 344 LRMSRPSDKEEREAQKSQKPS 364


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,819
Number of Sequences: 438
Number of extensions: 3455
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)