Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18c14
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa...    31   0.21 
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein...    27   2.5  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    27   3.4  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    27   3.4  
SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein S25|Schizosacc...    26   5.9  
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac...    26   5.9  
SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein S25|Sc...    26   5.9  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    25   7.8  
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    25   7.8  

>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
           Brl2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 680

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = +2

Query: 353 VNSQ-IIVHRIVCSRDQVLRVGSFQLSGRWTAIDHFTRVHKQREFVKQLRGHLDLPFQFT 529
           +NSQ   VHRI+   DQ+ R+ S + +    +     +   Q+  ++ L   +    QF 
Sbjct: 509 LNSQDTAVHRIIEFEDQLARLSSVRNNSIKQSTTFQVKKSSQKSTIQNLEEKVSYLQQFM 568

Query: 530 DRQHYVLEDLLREC 571
           D+ +  L DL  +C
Sbjct: 569 DKNNATLTDLEFQC 582


>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 715

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = +3

Query: 87  TAFSSPIAKTSISGLTLTYKCGKAPSAPYFLRTLSYRDKSNMASNSSRVMNISA*RNEKP 266
           + FSSP    S +  +      K  + P  + T S    +  +S + R +N+S  +N+KP
Sbjct: 569 SVFSSPFNVPSFTVSSSDQVQKKKGNVPNAIETDSSPSDTISSSPTVRAVNLSPSKNQKP 628

Query: 267 PTSL 278
           P  L
Sbjct: 629 PKIL 632


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
            Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -3

Query: 301  MRKMEEFTREVGGFSFLYADIFMTREEFEAMF 206
            +RK EE  RE+ G+  L+ D+    E  + ++
Sbjct: 1226 LRKQEEKQREIWGYKILFLDVLFPLELHKVIY 1257


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 17/64 (26%), Positives = 31/64 (48%)
 Frame = +3

Query: 99  SPIAKTSISGLTLTYKCGKAPSAPYFLRTLSYRDKSNMASNSSRVMNISA*RNEKPPTSL 278
           SP  K S+  L L +   K+PS+   +  +S  + S+ +++    +N+S   NE    S+
Sbjct: 163 SPPEKPSMKDLAL-FHGNKSPSSKETIPKVSNSNSSDTSTDDQAYLNVSVSENEHADRSI 221

Query: 279 VNSS 290
              S
Sbjct: 222 KTHS 225


>SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 88

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -3

Query: 343 GKVKEKKPYSPVTAMRKMEEFTREVGGFSFLYADIFMTR 227
           GKVK+K  ++ V     ++   +EV  F F+   + + R
Sbjct: 10  GKVKDKAQHATVFDKSIIDRINKEVPAFKFISVSVLVDR 48


>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
 Frame = -3

Query: 547 DIVLPISELERQIEMATQLFDKFPLLVYPC-KVIDRGPSSGQLKRPHSKYLVPGTNYAMY 371
           D+V P  E   Q+ M ++ FD     ++ C K++   PS   L     + + PG    + 
Sbjct: 66  DVVAPTVE---QLAMNSEPFD----YIFVCLKIL---PSVYNLDTAIKEVVTPGHTCIVL 115

Query: 370 NDLGVYGVPGKVKEKKPYSPVTAMRKMEEFTR 275
           N  G+ G   +++   P +PV +    ++F +
Sbjct: 116 NTTGIVGAEKELQHAFPNNPVLSFVLPDQFAQ 147


>SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -3

Query: 343 GKVKEKKPYSPVTAMRKMEEFTREVGGFSFLYADIFMTR 227
           GKVK+K  ++ V     ++   +EV  F F+   + + R
Sbjct: 10  GKVKDKAQHATVFDKSIIDRINKEVPAFKFISVSVLVDR 48


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -3

Query: 238 FMTREEFEA--MFDLSLYERVRRKYGAEGAFPHLYV 137
           F+T E+  A   F +  Y     KY AEG F H+Y+
Sbjct: 6   FLTGEKLLAGSKFVIGKYNVTIEKYIAEGGFSHVYL 41


>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = -3

Query: 349 VPGKVKEKKPYSPVTAMRKMEEFTREVGGFSFLYADIFMTREEFEAMFDLSLYERVRR 176
           +P    E+    P   +++  +F ++      + A   + +E+FE   DL L  RVRR
Sbjct: 287 LPPPSHEESYNPPEEYLKQSSDFPKKYKSLRVVPAYSNLIKEKFERCLDLYLAPRVRR 344


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,099,075
Number of Sequences: 5004
Number of extensions: 67858
Number of successful extensions: 190
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)