Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18c14
(687 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0098 - 12844631-12845074,12845329-12846570 105 4e-23
04_03_0370 + 15030829-15030837,15031579-15031957,15033434-150336... 29 2.6
08_02_0994 - 23395808-23396920 29 3.5
01_06_0746 - 31636024-31641396 28 6.0
10_08_1019 - 22299800-22299946,22300040-22300109,22300930-223010... 28 8.0
06_03_0099 + 16633928-16638213,16638299-16638386,16638823-166389... 28 8.0
05_03_0212 + 10260690-10261272,10261921-10262435,10262446-102625... 28 8.0
04_04_0706 + 27419215-27419371,27419521-27419734,27419818-274199... 28 8.0
02_05_1224 + 35045268-35045270,35045735-35045863,35046037-350461... 28 8.0
02_01_0451 - 3237849-3238061,3238142-3238268,3238418-3238656,323... 28 8.0
01_05_0472 + 22539803-22540121,22540610-22540635 28 8.0
>10_07_0098 - 12844631-12845074,12845329-12846570
Length = 561
Score = 105 bits (251), Expect = 4e-23
Identities = 59/187 (31%), Positives = 97/187 (51%), Gaps = 3/187 (1%)
Frame = -3
Query: 679 MLSFGNDALFRYLFGWLLPPKPAFLKFTTTPGVRAYTFTKQVFQDIVLPISELERQIEMA 500
+L FG+ FR+L GWL+PPK + LK T +R Y V QD+++P+ ++ +E
Sbjct: 350 ILPFGDQFWFRFLLGWLMPPKVSLLKATQGESIRNYYHDNHVIQDMLVPLYKVGDALEFV 409
Query: 499 TQLFDKFPLLVYPCKVIDRGPSSGQLKRP--HSKYLVPGTNYA-MYNDLGVYGVPGKVKE 329
+ + +PL + P ++ + P + T+YA M+ D+GVY PG V
Sbjct: 410 HKEMEVYPLWLCPHRLYKLPVKTMVYPEPGFEHHHRQGDTSYAQMFTDVGVYYAPGAVLR 469
Query: 328 KKPYSPVTAMRKMEEFTREVGGFSFLYADIFMTREEFEAMFDLSLYERVRRKYGAEGAFP 149
+ ++ A+ ++E++ E + YA + ++F MFD S YE R+KYGA G F
Sbjct: 470 GEEFNGALAVHRLEQWLIENHSYQPQYAVSELNEKDFWRMFDASHYEHCRQKYGAVGTFM 529
Query: 148 HLYVKVK 128
+Y K K
Sbjct: 530 SVYYKSK 536
>04_03_0370 +
15030829-15030837,15031579-15031957,15033434-15033626,
15033859-15034102,15035383-15035445
Length = 295
Score = 29.5 bits (63), Expect = 2.6
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Frame = +2
Query: 305 RHRAVWLLLFDLPRDAVNSQIIVHRIVCS-RDQVLRVGSFQLSGRWTAIDHFTRVHKQRE 481
+H+AV + L P D N ++H ++ S +D+ LRV + S + A+ + +Q +
Sbjct: 93 KHKAVQVTLLGGPWDT-NLDRVIHEVLLSCKDKTLRVNA-SASAQILALYELQK--QQHK 148
Query: 482 FVKQLRGHLDLPFQFTDRQH 541
F++Q + + +P F +QH
Sbjct: 149 FLEQ-QHNFQMPQNFQKQQH 167
>08_02_0994 - 23395808-23396920
Length = 370
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -2
Query: 680 HALIRKRRLVPILVRLAAAPQARLFKIHDDAGGA 579
+AL+ K R+V + V AP+ RL + +DDA A
Sbjct: 138 NALVSKARVVAVSVEYHLAPEHRLPRAYDDAWAA 171
>01_06_0746 - 31636024-31641396
Length = 1790
Score = 28.3 bits (60), Expect = 6.0
Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 3/108 (2%)
Frame = +2
Query: 326 LLFDLPRDAVNSQIIVHRIVCSRDQVLRVGSFQLSGRWTAIDHFTRVHKQREFVKQLRGH 505
LL ++ ++ N IIV+++ + D + G F R T + ++HK +V L
Sbjct: 747 LLLEIIKERTNEHIIVNQLFLAFDGAMEYGKFTEEYRLTLL---PQIHK---YVISLVEQ 800
Query: 506 LDLPFQFTDRQHYVLEDLLRECVGSHPRRRREF---*KGGLGGQQPTE 640
L L + + L+DL V P+ +++F + GL +PTE
Sbjct: 801 LLLKDKDQIKIVRTLQDLYDLAVHDFPKIKKDFEQLRREGLALSRPTE 848
>10_08_1019 -
22299800-22299946,22300040-22300109,22300930-22301066,
22301142-22301195,22301638-22301694,22301814-22301846,
22301942-22302067,22302162-22302815,22303042-22303166,
22303770-22303935
Length = 522
Score = 27.9 bits (59), Expect = 8.0
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = -2
Query: 680 HALIRKRRLVPILVRLAAAPQARLFKIHDDAGGASLHIHEASLPRHSVADQ*TGTADRDG 501
+A + +RR + AAA A +IHD A AS P+ S D T ++D
Sbjct: 189 NAAVAERRPLREREEAAAAAAAAAKRIHDHHTPAESKAEAASEPQVSAGDHSTQSSDHSA 248
Query: 500 HAI 492
A+
Sbjct: 249 SAV 251
>06_03_0099 +
16633928-16638213,16638299-16638386,16638823-16638950,
16640008-16640278
Length = 1590
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 4 DTQSGRQNERERISSRSGQFA-STEMFTGQRSLH 102
D SGRQ ER ++ R G+F S + QR H
Sbjct: 249 DEYSGRQRERRNMNERHGRFTDSNQRRRDQRDYH 282
>05_03_0212 +
10260690-10261272,10261921-10262435,10262446-10262569,
10262840-10263042,10263169-10263240,10264905-10265007,
10265350-10265582
Length = 610
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 311 RAVWLLLFDLPRDAVNSQII 370
R VW LL D P D +N Q I
Sbjct: 242 RTVWFLLLDFPLDYINMQYI 261
>04_04_0706 + 27419215-27419371,27419521-27419734,27419818-27419913,
27420006-27420123,27420211-27420384,27420633-27420803,
27420932-27420987,27421125-27421214,27421296-27421444,
27421640-27421722,27421830-27421958,27422063-27422137,
27422248-27422416,27422965-27423104,27423191-27423298,
27423603-27423783,27424445-27424542,27424639-27424728,
27424881-27425034,27425376-27425431,27425483-27425533,
27425651-27425732,27425821-27425995,27426748-27426823,
27426951-27427121,27427198-27427269,27427350-27427454,
27427948-27428037,27428703-27428908,27428989-27429190,
27429294-27429473,27429858-27429925,27430005-27430341,
27430428-27430637,27430765-27431448,27431537-27431940,
27432495-27432542,27432777-27433023,27433381-27433602,
27433796-27434026
Length = 2122
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +3
Query: 132 TLTYKCGKAPSAPYFLRTLSYRDKSNMASNSSRVMN 239
TLT K +A P FLRTL + + S S R M+
Sbjct: 1822 TLTMKLTEATFRPLFLRTLEWAESEVDRSTSKRSMD 1857
>02_05_1224 + 35045268-35045270,35045735-35045863,35046037-35046180,
35046306-35046451,35046583-35046739,35046838-35046896,
35046978-35047137,35047716-35047865,35047969-35048105,
35048186-35048332,35048428-35048540,35048880-35048971,
35049637-35049738,35050108-35050145,35050255-35050381,
35050462-35050632,35050721-35050852,35050929-35051038,
35051118-35051178,35051386-35051427,35051756-35051933,
35052043-35052248,35052843-35052962,35053138-35053182,
35053310-35053408,35053846-35054058,35054254-35054393,
35054469-35054583,35054684-35054722,35054816-35054899,
35054969-35055139,35055891-35056100,35056193-35056378,
35056473-35056601,35056679-35056749,35056834-35056933,
35057016-35057072,35057778-35057834,35057940-35058020,
35058256-35058338,35058448-35058562
Length = 1572
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/71 (22%), Positives = 29/71 (40%)
Frame = -3
Query: 382 YAMYNDLGVYGVPGKVKEKKPYSPVTAMRKMEEFTREVGGFSFLYADIFMTREEFEAMFD 203
+ + L G PG V KKP P + +M + R F ++ + + EA +
Sbjct: 1248 FLLQRSLKAAGAPGSVSRKKPPQPTSLFGRMAQGLRS-ASFVNMHVEATDVVRQVEAKYP 1306
Query: 202 LSLYERVRRKY 170
L+++ Y
Sbjct: 1307 ALLFKQQLTAY 1317
>02_01_0451 -
3237849-3238061,3238142-3238268,3238418-3238656,
3238937-3239151,3239569-3240031,3240562-3240715,
3241724-3241833,3242540-3242797,3242843-3242854,
3243492-3243545,3244202-3244312,3244390-3244545,
3244798-3245201,3245405-3245501,3246041-3246050,
3246097-3246164,3246652-3246762,3246874-3247074,
3247384-3247485,3247980-3248087,3248209-3248411,
3248563-3248680,3248774-3248854,3248958-3249500,
3249602-3249730
Length = 1428
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = -2
Query: 437 IVRTTETTPL*VLGPGNKLCDVQ*FGSLRRPGEGQREEAIQPGDGYEKDGRVHER 273
++ +TET + V P L D+ F SLR+ +G+ + PG+ + GR R
Sbjct: 815 VLFSTETFAMGVNAPARTLKDLVVFDSLRK-FDGKEHRKLLPGEYIQMAGRAGRR 868
>01_05_0472 + 22539803-22540121,22540610-22540635
Length = 114
Score = 27.9 bits (59), Expect = 8.0
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Frame = -2
Query: 395 PGNK---LCDVQ*FG-SLRRPGEGQREEAI--QPGDGYEKDGRVHE 276
PGN CDV G +LR P G + QP D +E+DG V E
Sbjct: 32 PGNSDEMACDVAGAGDALRAPSSGAPVGVLLEQPADEFEEDGNVDE 77
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,141,835
Number of Sequences: 37544
Number of extensions: 480288
Number of successful extensions: 1412
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1411
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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