Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18c14
(687 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D13643-1|BAA02806.3| 553|Homo sapiens KIAA0018 protein protein. 124 3e-28
BC011669-1|AAH11669.1| 516|Homo sapiens 24-dehydrocholesterol r... 124 3e-28
BC004375-1|AAH04375.1| 516|Homo sapiens 24-dehydrocholesterol r... 124 3e-28
AF398342-1|AAL15644.1| 516|Homo sapiens 3beta-hydroxysterol del... 124 3e-28
AF261758-1|AAG17288.1| 516|Homo sapiens seladin-1 protein. 124 3e-28
AB073391-1|BAE45721.1| 427|Homo sapiens putative protein produc... 124 3e-28
L11160-1|AAA61700.1| 88|Homo sapiens T-cell receptor alpha-cha... 37 0.077
AF253515-1|AAN70985.1| 1957|Homo sapiens BAF250b subunit protein. 30 6.7
BC095519-1|AAH95519.1| 312|Homo sapiens taste receptor, type 2,... 30 8.9
BC069066-1|AAH69066.1| 312|Homo sapiens taste receptor, type 2,... 30 8.9
AY724954-1|AAU21150.1| 312|Homo sapiens taste receptor T2R9 pro... 30 8.9
AL449266-7|CAI14357.1| 761|Homo sapiens chromosome 1 open readi... 30 8.9
AF227135-1|AAF43908.1| 312|Homo sapiens candidate taste recepto... 30 8.9
AB199065-1|BAD97968.1| 290|Homo sapiens bitter taste receptor T... 30 8.9
AB199064-1|BAD97967.1| 290|Homo sapiens bitter taste receptor T... 30 8.9
AB199063-1|BAD97966.1| 290|Homo sapiens bitter taste receptor T... 30 8.9
>D13643-1|BAA02806.3| 553|Homo sapiens KIAA0018 protein protein.
Length = 553
Score = 124 bits (299), Expect = 3e-28
Identities = 69/185 (37%), Positives = 103/185 (55%)
Frame = -3
Query: 685 EDMLSFGNDALFRYLFGWLLPPKPAFLKFTTTPGVRAYTFTKQVFQDIVLPISELERQIE 506
+D++ FGN+ +FRYLFGW++PPK + LK T +R V QD+++P+ L++ +
Sbjct: 377 QDIIPFGNNPIFRYLFGWMVPPKISLLKLTQGETLRKLYEQHHVVQDMLVPMKCLQQALH 436
Query: 505 MATQLFDKFPLLVYPCKVIDRGPSSGQLKRPHSKYLVPGTNYAMYNDLGVYGVPGKVKEK 326
+P+ + P + PS L P G +Y D+G YG P +VK
Sbjct: 437 TFQNDIHVYPIWLCPFIL----PSQPGLVHPK------GNEAELYIDIGAYGEP-RVKH- 484
Query: 325 KPYSPVTAMRKMEEFTREVGGFSFLYADIFMTREEFEAMFDLSLYERVRRKYGAEGAFPH 146
+ + MR++E+F R V GF LYAD +M REEF MFD SLY ++R K G + AFP
Sbjct: 485 --FEARSCMRQLEKFVRSVHGFQMLYADCYMNREEFWEMFDGSLYHKLREKLGCQDAFPE 542
Query: 145 LYVKV 131
+Y K+
Sbjct: 543 VYDKI 547
>BC011669-1|AAH11669.1| 516|Homo sapiens 24-dehydrocholesterol
reductase protein.
Length = 516
Score = 124 bits (299), Expect = 3e-28
Identities = 69/185 (37%), Positives = 103/185 (55%)
Frame = -3
Query: 685 EDMLSFGNDALFRYLFGWLLPPKPAFLKFTTTPGVRAYTFTKQVFQDIVLPISELERQIE 506
+D++ FGN+ +FRYLFGW++PPK + LK T +R V QD+++P+ L++ +
Sbjct: 340 QDIIPFGNNPIFRYLFGWMVPPKISLLKLTQGETLRKLYEQHHVVQDMLVPMKCLQQALH 399
Query: 505 MATQLFDKFPLLVYPCKVIDRGPSSGQLKRPHSKYLVPGTNYAMYNDLGVYGVPGKVKEK 326
+P+ + P + PS L P G +Y D+G YG P +VK
Sbjct: 400 TFQNDIHVYPIWLCPFIL----PSQPGLVHPK------GNEAELYIDIGAYGEP-RVKH- 447
Query: 325 KPYSPVTAMRKMEEFTREVGGFSFLYADIFMTREEFEAMFDLSLYERVRRKYGAEGAFPH 146
+ + MR++E+F R V GF LYAD +M REEF MFD SLY ++R K G + AFP
Sbjct: 448 --FEARSCMRQLEKFVRSVHGFQMLYADCYMNREEFWEMFDGSLYHKLREKLGCQDAFPE 505
Query: 145 LYVKV 131
+Y K+
Sbjct: 506 VYDKI 510
>BC004375-1|AAH04375.1| 516|Homo sapiens 24-dehydrocholesterol
reductase protein.
Length = 516
Score = 124 bits (299), Expect = 3e-28
Identities = 69/185 (37%), Positives = 103/185 (55%)
Frame = -3
Query: 685 EDMLSFGNDALFRYLFGWLLPPKPAFLKFTTTPGVRAYTFTKQVFQDIVLPISELERQIE 506
+D++ FGN+ +FRYLFGW++PPK + LK T +R V QD+++P+ L++ +
Sbjct: 340 QDIIPFGNNPIFRYLFGWMVPPKISLLKLTQGETLRKLYEQHHVVQDMLVPMKCLQQALH 399
Query: 505 MATQLFDKFPLLVYPCKVIDRGPSSGQLKRPHSKYLVPGTNYAMYNDLGVYGVPGKVKEK 326
+P+ + P + PS L P G +Y D+G YG P +VK
Sbjct: 400 TFQNDIHVYPIWLCPFIL----PSQPGLVHPK------GNEAELYIDIGAYGEP-RVKH- 447
Query: 325 KPYSPVTAMRKMEEFTREVGGFSFLYADIFMTREEFEAMFDLSLYERVRRKYGAEGAFPH 146
+ + MR++E+F R V GF LYAD +M REEF MFD SLY ++R K G + AFP
Sbjct: 448 --FEARSCMRQLEKFVRSVHGFQMLYADCYMNREEFWEMFDGSLYHKLREKLGCQDAFPE 505
Query: 145 LYVKV 131
+Y K+
Sbjct: 506 VYDKI 510
>AF398342-1|AAL15644.1| 516|Homo sapiens 3beta-hydroxysterol delta
24 reductase protein.
Length = 516
Score = 124 bits (299), Expect = 3e-28
Identities = 69/185 (37%), Positives = 103/185 (55%)
Frame = -3
Query: 685 EDMLSFGNDALFRYLFGWLLPPKPAFLKFTTTPGVRAYTFTKQVFQDIVLPISELERQIE 506
+D++ FGN+ +FRYLFGW++PPK + LK T +R V QD+++P+ L++ +
Sbjct: 340 QDIIPFGNNPIFRYLFGWMVPPKISLLKLTQGETLRKLYEQHHVVQDMLVPMKCLQQALH 399
Query: 505 MATQLFDKFPLLVYPCKVIDRGPSSGQLKRPHSKYLVPGTNYAMYNDLGVYGVPGKVKEK 326
+P+ + P + PS L P G +Y D+G YG P +VK
Sbjct: 400 TFQNDIHVYPIWLCPFIL----PSQPGLVHPK------GNEAELYIDIGAYGEP-RVKH- 447
Query: 325 KPYSPVTAMRKMEEFTREVGGFSFLYADIFMTREEFEAMFDLSLYERVRRKYGAEGAFPH 146
+ + MR++E+F R V GF LYAD +M REEF MFD SLY ++R K G + AFP
Sbjct: 448 --FEARSCMRQLEKFVRSVHGFQMLYADCYMNREEFWEMFDGSLYHKLREKLGCQDAFPE 505
Query: 145 LYVKV 131
+Y K+
Sbjct: 506 VYDKI 510
>AF261758-1|AAG17288.1| 516|Homo sapiens seladin-1 protein.
Length = 516
Score = 124 bits (299), Expect = 3e-28
Identities = 69/185 (37%), Positives = 103/185 (55%)
Frame = -3
Query: 685 EDMLSFGNDALFRYLFGWLLPPKPAFLKFTTTPGVRAYTFTKQVFQDIVLPISELERQIE 506
+D++ FGN+ +FRYLFGW++PPK + LK T +R V QD+++P+ L++ +
Sbjct: 340 QDIIPFGNNPIFRYLFGWMVPPKISLLKLTQGETLRKLYEQHHVVQDMLVPMKCLQQALH 399
Query: 505 MATQLFDKFPLLVYPCKVIDRGPSSGQLKRPHSKYLVPGTNYAMYNDLGVYGVPGKVKEK 326
+P+ + P + PS L P G +Y D+G YG P +VK
Sbjct: 400 TFQNDIHVYPIWLCPFIL----PSQPGLVHPK------GNEAELYIDIGAYGEP-RVKH- 447
Query: 325 KPYSPVTAMRKMEEFTREVGGFSFLYADIFMTREEFEAMFDLSLYERVRRKYGAEGAFPH 146
+ + MR++E+F R V GF LYAD +M REEF MFD SLY ++R K G + AFP
Sbjct: 448 --FEARSCMRQLEKFVRSVHGFQMLYADCYMNREEFWEMFDGSLYHKLREKLGCQDAFPE 505
Query: 145 LYVKV 131
+Y K+
Sbjct: 506 VYDKI 510
>AB073391-1|BAE45721.1| 427|Homo sapiens putative protein product
of Nbla03646 protein.
Length = 427
Score = 124 bits (299), Expect = 3e-28
Identities = 69/185 (37%), Positives = 103/185 (55%)
Frame = -3
Query: 685 EDMLSFGNDALFRYLFGWLLPPKPAFLKFTTTPGVRAYTFTKQVFQDIVLPISELERQIE 506
+D++ FGN+ +FRYLFGW++PPK + LK T +R V QD+++P+ L++ +
Sbjct: 251 QDIIPFGNNPIFRYLFGWMVPPKISLLKLTQGETLRKLYEQHHVVQDMLVPMKCLQQALH 310
Query: 505 MATQLFDKFPLLVYPCKVIDRGPSSGQLKRPHSKYLVPGTNYAMYNDLGVYGVPGKVKEK 326
+P+ + P + PS L P G +Y D+G YG P +VK
Sbjct: 311 TFQNDIHVYPIWLCPFIL----PSQPGLVHPK------GNEAELYIDIGAYGEP-RVKH- 358
Query: 325 KPYSPVTAMRKMEEFTREVGGFSFLYADIFMTREEFEAMFDLSLYERVRRKYGAEGAFPH 146
+ + MR++E+F R V GF LYAD +M REEF MFD SLY ++R K G + AFP
Sbjct: 359 --FEARSCMRQLEKFVRSVHGFQMLYADCYMNREEFWEMFDGSLYHKLREKLGCQDAFPE 416
Query: 145 LYVKV 131
+Y K+
Sbjct: 417 VYDKI 421
>L11160-1|AAA61700.1| 88|Homo sapiens T-cell receptor alpha-chain
variable region protein.
Length = 88
Score = 36.7 bits (81), Expect = 0.077
Identities = 20/47 (42%), Positives = 26/47 (55%)
Frame = +3
Query: 387 VPGTKYLEWGRFSCPDDGPRSITLHGYTSSGNLSNNCVAISICRSSS 527
+ GT Y+ W R P GP + +HG TS+ N CVAI+ R SS
Sbjct: 43 ISGTDYIHWYR-QLPSQGPEYV-IHGLTSNVNNRMACVAIAEDRKSS 87
>AF253515-1|AAN70985.1| 1957|Homo sapiens BAF250b subunit protein.
Length = 1957
Score = 30.3 bits (65), Expect = 6.7
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = -3
Query: 445 RGPSSGQLKRP-HSKYLVPGT-NYAMYNDLGVYGVPGKVKEKKPYSPVTAMRKMEEFTRE 272
+GPSSGQ H L P NY + D G+YG P K E Y+ + ++ E + +
Sbjct: 1057 QGPSSGQPPYGGHQPGLYPQQPNYKRHMD-GMYGPPAKRHEGDMYNMQYSSQQQEMYNQY 1115
Query: 271 VGGFS 257
G +S
Sbjct: 1116 GGSYS 1120
>BC095519-1|AAH95519.1| 312|Homo sapiens taste receptor, type 2,
member 9 protein.
Length = 312
Score = 29.9 bits (64), Expect = 8.9
Identities = 15/26 (57%), Positives = 16/26 (61%)
Frame = +3
Query: 273 SLVNSSIFLIAVTGLYGFFSLTFPGT 350
SL S I L+ V L GFF L FPGT
Sbjct: 50 SLAISRICLLCVISLDGFFMLLFPGT 75
>BC069066-1|AAH69066.1| 312|Homo sapiens taste receptor, type 2,
member 9 protein.
Length = 312
Score = 29.9 bits (64), Expect = 8.9
Identities = 15/26 (57%), Positives = 16/26 (61%)
Frame = +3
Query: 273 SLVNSSIFLIAVTGLYGFFSLTFPGT 350
SL S I L+ V L GFF L FPGT
Sbjct: 50 SLAISRICLLCVISLDGFFMLLFPGT 75
>AY724954-1|AAU21150.1| 312|Homo sapiens taste receptor T2R9
protein.
Length = 312
Score = 29.9 bits (64), Expect = 8.9
Identities = 15/26 (57%), Positives = 16/26 (61%)
Frame = +3
Query: 273 SLVNSSIFLIAVTGLYGFFSLTFPGT 350
SL S I L+ V L GFF L FPGT
Sbjct: 50 SLAISRICLLCVISLDGFFMLLFPGT 75
>AL449266-7|CAI14357.1| 761|Homo sapiens chromosome 1 open reading
frame 62 protein.
Length = 761
Score = 29.9 bits (64), Expect = 8.9
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -3
Query: 421 KRPHSKYLVPGTNYAMYNDLGVYGVPGKVKEKKPYSPVTA 302
K H +Y PG NY+ ++ G + P + E K SP A
Sbjct: 686 KEFHYRYNTPGQNYSNHSKRGAFVQPHSLDESKNSSPSLA 725
>AF227135-1|AAF43908.1| 312|Homo sapiens candidate taste receptor
T2R9 protein.
Length = 312
Score = 29.9 bits (64), Expect = 8.9
Identities = 15/26 (57%), Positives = 16/26 (61%)
Frame = +3
Query: 273 SLVNSSIFLIAVTGLYGFFSLTFPGT 350
SL S I L+ V L GFF L FPGT
Sbjct: 50 SLAISRICLLCVISLDGFFMLLFPGT 75
>AB199065-1|BAD97968.1| 290|Homo sapiens bitter taste receptor T2R9
protein.
Length = 290
Score = 29.9 bits (64), Expect = 8.9
Identities = 15/26 (57%), Positives = 16/26 (61%)
Frame = +3
Query: 273 SLVNSSIFLIAVTGLYGFFSLTFPGT 350
SL S I L+ V L GFF L FPGT
Sbjct: 42 SLAISRICLLCVISLDGFFMLLFPGT 67
>AB199064-1|BAD97967.1| 290|Homo sapiens bitter taste receptor T2R9
protein.
Length = 290
Score = 29.9 bits (64), Expect = 8.9
Identities = 15/26 (57%), Positives = 16/26 (61%)
Frame = +3
Query: 273 SLVNSSIFLIAVTGLYGFFSLTFPGT 350
SL S I L+ V L GFF L FPGT
Sbjct: 42 SLAISRICLLCVISLDGFFMLLFPGT 67
>AB199063-1|BAD97966.1| 290|Homo sapiens bitter taste receptor T2R9
protein.
Length = 290
Score = 29.9 bits (64), Expect = 8.9
Identities = 15/26 (57%), Positives = 16/26 (61%)
Frame = +3
Query: 273 SLVNSSIFLIAVTGLYGFFSLTFPGT 350
SL S I L+ V L GFF L FPGT
Sbjct: 42 SLAISRICLLCVISLDGFFMLLFPGT 67
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,159,351
Number of Sequences: 237096
Number of extensions: 2559422
Number of successful extensions: 6102
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 5847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6090
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7839245960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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