Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18c14
         (687 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL034489-1|CAA22461.1|  538|Caenorhabditis elegans Hypothetical ...   278   3e-75
AF026214-5|AAB71310.1|  525|Caenorhabditis elegans Hypothetical ...   114   6e-26
AF016678-10|AAB66148.1|  154|Caenorhabditis elegans Hypothetical...    32   0.33 
Z81097-20|CAB03178.1|  417|Caenorhabditis elegans Hypothetical p...    29   3.1  
Z66561-3|CAA91455.1|  422|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AL023833-1|CAA19477.1|  417|Caenorhabditis elegans Hypothetical ...    29   3.1  
AF116530-1|AAD05571.1|  417|Caenorhabditis elegans synthetic mul...    29   3.1  
Z71186-7|CAM35835.1|  552|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AF039716-4|AAB96739.1|  616|Caenorhabditis elegans Aminopeptidas...    28   7.2  
Z81513-13|CAB04180.2| 1213|Caenorhabditis elegans Hypothetical p...    27   9.5  

>AL034489-1|CAA22461.1|  538|Caenorhabditis elegans Hypothetical
           protein Y7A5A.1 protein.
          Length = 538

 Score =  278 bits (681), Expect = 3e-75
 Identities = 125/203 (61%), Positives = 155/203 (76%), Gaps = 2/203 (0%)
 Frame = -3

Query: 685 EDMLSFGNDALFRYLFGWLLPPKPAFLKFTTTPGVRAYTFTKQVFQDIVLPISELERQIE 506
           E M+ FGN  +FR   GWL PPKPAFLKFTTT  VR  TF KQVFQDIV+P+  L+ Q++
Sbjct: 333 ESMIPFGNHPVFRAFLGWLCPPKPAFLKFTTTQAVREMTFAKQVFQDIVMPLDTLKEQVD 392

Query: 505 MATQLFDKFPLLVYPCKVIDR--GPSSGQLKRPHSKYLVPGTNYAMYNDLGVYGVPGKVK 332
            A +LFD +PLLVYPC++ D   G   GQL+ P    LVPGTNY+M+NDLGVYG PG+V+
Sbjct: 393 TAVKLFDTYPLLVYPCRIYDHKGGAPQGQLRAPPKSRLVPGTNYSMFNDLGVYGTPGQVE 452

Query: 331 EKKPYSPVTAMRKMEEFTREVGGFSFLYADIFMTREEFEAMFDLSLYERVRRKYGAEGAF 152
            ++PY+P  AMR ME+FTR+VGG+SFLYADIFM+ EEF  MFD++LY +VR +Y  +GAF
Sbjct: 453 RREPYNPTHAMRAMEKFTRDVGGYSFLYADIFMSEEEFNEMFDMTLYNQVRLRYHCDGAF 512

Query: 151 PHLYVKVKPEIDVFAIGEENAVQ 83
           P LY KVKPEIDV +IGE  AV+
Sbjct: 513 PRLYDKVKPEIDVISIGETYAVK 535


>AF026214-5|AAB71310.1|  525|Caenorhabditis elegans Hypothetical
           protein F52H2.6 protein.
          Length = 525

 Score =  114 bits (274), Expect = 6e-26
 Identities = 66/184 (35%), Positives = 94/184 (51%)
 Frame = -3

Query: 682 DMLSFGNDALFRYLFGWLLPPKPAFLKFTTTPGVRAYTFTKQVFQDIVLPISELERQIEM 503
           D++ FGN+ LFRYL  W+ PPK AFLK TT   +R       V QD+++P+ +LE  I++
Sbjct: 350 DIVPFGNNVLFRYLMAWMCPPKIAFLKATTPNVLRKLYDRSHVLQDMLVPLDKLEECIDL 409

Query: 502 ATQLFDKFPLLVYPCKVIDRGPSSGQLKRPHSKYLVPGTNYAMYNDLGVYGVPGKVKEKK 323
             +  + +P+ + P            LK       +    + MY D+G YG    V  K 
Sbjct: 410 FHKEVEIYPMWLCPF----------YLKSQPGLMKLRNATHKMYVDVGAYG----VTSKD 455

Query: 322 PYSPVTAMRKMEEFTREVGGFSFLYADIFMTREEFEAMFDLSLYERVRRKYGAEGAFPHL 143
            Y      R++E F R V GF   YADI+MTR E+  MFD +LY+  R       AFP +
Sbjct: 456 GYHHERTTRRLESFVRSVNGFQMTYADIYMTRAEYAEMFDRTLYDWKRASCKCIDAFPDI 515

Query: 142 YVKV 131
           Y K+
Sbjct: 516 YDKI 519


>AF016678-10|AAB66148.1|  154|Caenorhabditis elegans Hypothetical
           protein K07E8.1 protein.
          Length = 154

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
 Frame = +3

Query: 384 FVPGTKYLEWGRFSCPDDGPRSITLHG----YTSSGNLSNNCV-AISI-CRSSSLIGN 539
           F+   +   WG FS  +D P     HG    Y S G + N  + A+ + C+S S+ G+
Sbjct: 21  FIKSPRITSWGSFSAWEDCPAGYYAHGMRIKYESEGQVDNTALDAVELACKSPSITGS 78


>Z81097-20|CAB03178.1|  417|Caenorhabditis elegans Hypothetical
           protein K07A1.12 protein.
          Length = 417

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = -3

Query: 217 EAMFDLSLYERVRRKYGAEGAFPHLYVKVKPEIDVFAIGEEN 92
           +A FD S Y+  R +YG  GA   +  KV+P+I +   GE N
Sbjct: 86  DAQFDASRYDTERSEYGGFGA---VNGKVEPDIRINHEGEVN 124


>Z66561-3|CAA91455.1|  422|Caenorhabditis elegans Hypothetical
           protein F08G12.3 protein.
          Length = 422

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = -3

Query: 385 NYAMYNDLG--VYGVPGKVKEKKPYSPVTAMRKMEEFTREVGGFSFLYADIF 236
           NY ++N LG      PGK+KEKK +   T  RK+ E   +      LY +IF
Sbjct: 228 NYNVHNGLGPSTLSSPGKIKEKKSF---TQYRKINERFSQTKS-PTLYTNIF 275


>AL023833-1|CAA19477.1|  417|Caenorhabditis elegans Hypothetical
           protein K07A1.12 protein.
          Length = 417

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = -3

Query: 217 EAMFDLSLYERVRRKYGAEGAFPHLYVKVKPEIDVFAIGEEN 92
           +A FD S Y+  R +YG  GA   +  KV+P+I +   GE N
Sbjct: 86  DAQFDASRYDTERSEYGGFGA---VNGKVEPDIRINHEGEVN 124


>AF116530-1|AAD05571.1|  417|Caenorhabditis elegans synthetic
           multivulva protein LIN-53 p48 protein.
          Length = 417

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = -3

Query: 217 EAMFDLSLYERVRRKYGAEGAFPHLYVKVKPEIDVFAIGEEN 92
           +A FD S Y+  R +YG  GA   +  KV+P+I +   GE N
Sbjct: 86  DAQFDASRYDTERSEYGGFGA---VNGKVEPDIRINHEGEVN 124


>Z71186-7|CAM35835.1|  552|Caenorhabditis elegans Hypothetical
           protein F23D12.10 protein.
          Length = 552

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = +1

Query: 145 NVGRLLQLHTSFELSRTEINQTWPQTPLG 231
           N+  +L+LH+SF+L+ T  +++ P TP G
Sbjct: 77  NLSGILELHSSFDLTNT-TSKSVPNTPFG 104


>AF039716-4|AAB96739.1|  616|Caenorhabditis elegans Aminopeptidase p
           protein 1 protein.
          Length = 616

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 421 KRPHSKYLVPGTNYAMYNDLG 359
           K PH  YL P TNYA+ + +G
Sbjct: 280 KEPHMVYLTPETNYAIGSIIG 300


>Z81513-13|CAB04180.2| 1213|Caenorhabditis elegans Hypothetical
           protein F26D2.10 protein.
          Length = 1213

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 17/42 (40%), Positives = 28/42 (66%)
 Frame = +2

Query: 299 HSRHRAVWLLLFDLPRDAVNSQIIVHRIVCSRDQVLRVGSFQ 424
           H+R+RAV+ +L  L  +A NS IIV RI+  + + + V S++
Sbjct: 474 HNRNRAVYSVLDQLQVNASNS-IIVKRILRRKYKGIVVNSYE 514


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,339,214
Number of Sequences: 27780
Number of extensions: 390546
Number of successful extensions: 1024
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)