Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18c14
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    32   0.006
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   4.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   4.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   4.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   4.8  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   4.8  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   6.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.3  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   8.3  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 31.9 bits (69), Expect = 0.006
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = -3

Query: 499 TQLFDKFPLLVYPCKVIDRGPSSGQLKRPHSKYLVPGTNYAMYNDLGVY 353
           T+L     L+VY C V+  G S G    P S   +PG+N A++ +  +Y
Sbjct: 523 TKLHPPADLVVYACNVVGSGLSHGNWIYPAS-MTIPGSNSAVFTNYKLY 570


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -1

Query: 681 TCSHSETTPCSDTCSVGC 628
           TC++    PC+ T + GC
Sbjct: 426 TCTNCGPNPCTHTTTNGC 443


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -1

Query: 681 TCSHSETTPCSDTCSVGC 628
           TC++    PC+ T + GC
Sbjct: 412 TCTNCGPNPCTHTTTNGC 429


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -1

Query: 681 TCSHSETTPCSDTCSVGC 628
           TC++    PC+ T + GC
Sbjct: 446 TCTNCGPNPCTHTTTNGC 463


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -1

Query: 681 TCSHSETTPCSDTCSVGC 628
           TC++    PC+ T + GC
Sbjct: 395 TCTNCGPNPCTHTTTNGC 412


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 501 PRNCLTNSRCLCTRVK*SIAVHRP 430
           PR+  +NSRC   R K  I+V  P
Sbjct: 323 PRSPESNSRCSVKREKIKISVSYP 346


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/27 (25%), Positives = 14/27 (51%)
 Frame = +2

Query: 8   HKVDAKTRENVFPLEVDSLHRPRCSLD 88
           H   + T+  +  +E+  LH P C ++
Sbjct: 382 HLPTSLTKSKMEVMELSDLHHPNCKIN 408


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +2

Query: 446 IDHFTRVHKQREFVKQLRGHLDLPFQFT 529
           +  +TR    +   K+ R +L LPF  T
Sbjct: 240 LQKYTRSFAHQSINKEARSNLYLPFHLT 267


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +2

Query: 446 IDHFTRVHKQREFVKQLRGHLDLPFQFT 529
           +  +TR    +   K+ R +L LPF  T
Sbjct: 235 LQKYTRSFAHQSINKEARSNLYLPFHLT 262


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,566
Number of Sequences: 438
Number of extensions: 4824
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)