Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18c11
         (674 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0201 + 26687369-26689228                                         28   5.9  
05_07_0143 + 28000038-28000211,28002217-28002230,28002713-280027...    28   7.8  

>02_05_0201 + 26687369-26689228
          Length = 619

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 594 PPPAKSMPTPATFKVLM*LCKRGFL 668
           PPP +  P P T++    +CK+GF+
Sbjct: 23  PPPPQPPPPPLTYRHHCKVCKKGFM 47


>05_07_0143 +
           28000038-28000211,28002217-28002230,28002713-28002788,
           28003304-28003865,28004476-28004761,28004848-28005118,
           28005478-28005633,28005871-28006368,28006809-28007093
          Length = 773

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -2

Query: 568 LVQDIINAINRTGGSYYVQGRNAGENVESCLLLQRTCRQDRNL-AQSDVN 422
           LVQ +   +NR     Y   R+ G + +  +L +R C    NL A  D+N
Sbjct: 29  LVQSLKEIVNRPEAEIYAALRDCGMDPDEAILFKRQCGFKVNLRAWYDIN 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,567,934
Number of Sequences: 37544
Number of extensions: 340995
Number of successful extensions: 711
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)