Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18c10
         (203 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0169 - 1346281-1349188,1350069-1350184                           27   2.1  
08_02_1102 + 24319569-24319917,24320120-24321496,24321819-243220...    26   4.8  
05_07_0055 - 27374028-27374080,27374205-27374295,27374930-273754...    26   4.8  
03_02_0521 - 9093932-9094252                                           26   4.8  
08_02_1040 - 23873354-23874509,23875645-23875796                       25   6.4  
01_07_0090 - 41003888-41004716,41005142-41005559,41007010-41007193     25   6.4  
06_03_0858 + 25448807-25448815,25451253-25452038,25452956-25452991     25   8.4  
01_06_1233 - 35594510-35594687,35594985-35595100,35595364-355954...    25   8.4  

>06_01_0169 - 1346281-1349188,1350069-1350184
          Length = 1007

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 191 LSGCYKNGIMKTDAQSTSNTHNFMYSPDNNLEVVII 84
           +  C  + IM+    S S   NF+YS  +N+  VI+
Sbjct: 493 VKSCRVHDIMRDIIVSISKEENFVYSTGDNVSTVIV 528


>08_02_1102 +
           24319569-24319917,24320120-24321496,24321819-24322001,
           24322147-24322460,24322515-24322631,24323057-24323313,
           24323504-24323684,24323802-24324074,24324535-24324729
          Length = 1081

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -1

Query: 161 KTDAQSTSNTHNFMYSPDNNLEVVII 84
           K+   S S+ +NF++SPD+N    ++
Sbjct: 310 KSYITSPSDLNNFLFSPDSNFRQTVV 335


>05_07_0055 -
           27374028-27374080,27374205-27374295,27374930-27375448,
           27375544-27375779,27376363-27376846,27376993-27378282
          Length = 890

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -2

Query: 43  PPPPKSCHLL 14
           PPPP+ CHLL
Sbjct: 71  PPPPRRCHLL 80


>03_02_0521 - 9093932-9094252
          Length = 106

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -1

Query: 200 RLFLSGCYKNGIMKTDAQSTSNTHNF--MYSPDNNLEVVIITNSDGDHDG 57
           RL   G  K+G+ +  A +  ++ +   M SP   L  V+I ++DG H G
Sbjct: 11  RLPRRGREKSGLPRKTASTLPSSPSLGPMSSPTRELPGVVILDNDGFHSG 60


>08_02_1040 - 23873354-23874509,23875645-23875796
          Length = 435

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -1

Query: 179 YKNGIMKTDAQSTSNTHNFMYSPDNNLEVVIITNSDGDH 63
           Y  G M+ D +  +   + +  PD   EV +I+  D DH
Sbjct: 145 YLIGRMQMDGEEIAVVSSPLVEPDTIAEVPVISMDDDDH 183


>01_07_0090 - 41003888-41004716,41005142-41005559,41007010-41007193
          Length = 476

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 30  FGGGG*FQIAIVIAVRIGNDDHLQIVVGRIHEVVRVRCRLGV 155
           +GGGG      + ++  G D H  +V  R  E VRV   +GV
Sbjct: 412 YGGGGGAMTRAIGSLMHGGDQHAGVVDRRRGEGVRVVDYMGV 453


>06_03_0858 + 25448807-25448815,25451253-25452038,25452956-25452991
          Length = 276

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -3

Query: 156 GRPVDIEHAQLHVFSRQQSGGGHHYQFGRRSR 61
           GR       Q+H  SR+   G HH Q   ++R
Sbjct: 150 GRRAPSPSPQMHAASRRHHHGRHHQQVAPKAR 181


>01_06_1233 -
           35594510-35594687,35594985-35595100,35595364-35595463,
           35595536-35595603,35596940-35597071
          Length = 197

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = -1

Query: 170 GIMKTDAQSTSNTHNFMYSPDNNLEVVIITNSDGDHDGYLELTAAAKIMSPFIS 9
           G+MK +A  TS     +    N     I+ N    +  YL+L    + M  F S
Sbjct: 93  GVMKNEAMGTSQGSTVLCYHYNFCHFYILENLSNRYSPYLQLMCWGRYMHYFQS 146


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,808,674
Number of Sequences: 37544
Number of extensions: 125896
Number of successful extensions: 348
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 14,793,348
effective HSP length: 47
effective length of database: 13,028,780
effective search space used: 260575600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)