Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18c10
         (203 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY344831-1|AAR05802.1|  333|Anopheles gambiae ICHIT protein.           23   1.3  
AY344829-1|AAR05800.1|  334|Anopheles gambiae ICHIT protein.           23   1.3  
AY028785-1|AAK32959.1|  509|Anopheles gambiae cytochrome P450 pr...    23   1.7  
DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2 pro...    22   3.0  
CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           21   4.0  
AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific tran...    21   4.0  
AY785360-1|AAV52864.1|  759|Anopheles gambiae male-specific tran...    21   4.0  
AY725820-1|AAU50568.1|  593|Anopheles gambiae fruitless female-s...    21   4.0  
AY725819-1|AAU50567.1|  569|Anopheles gambiae fruitless male-spe...    21   4.0  
Y09951-1|CAA71082.1|  107|Anopheles gambiae histone H2a protein.       21   7.0  
AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal...    21   7.0  
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    20   9.2  
AY578812-1|AAT07317.1|  932|Anopheles gambiae wishful thinking p...    20   9.2  
AY263175-1|AAP78790.1|  814|Anopheles gambiae TmcA-like protein ...    20   9.2  
AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcript...    20   9.2  

>AY344831-1|AAR05802.1|  333|Anopheles gambiae ICHIT protein.
          Length = 333

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
 Frame = -2

Query: 115 LPTTIWRWSSL--PIRTAITMAIWN*P 41
           +PTT   WS L  P  T  T  +W  P
Sbjct: 232 VPTTTTTWSDLPPPPPTTTTTTVWTDP 258


>AY344829-1|AAR05800.1|  334|Anopheles gambiae ICHIT protein.
          Length = 334

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
 Frame = -2

Query: 115 LPTTIWRWSSL--PIRTAITMAIWN*P 41
           +PTT   WS L  P  T  T  +W  P
Sbjct: 233 VPTTTTTWSDLPPPPPTTTTTTVWTDP 259


>AY028785-1|AAK32959.1|  509|Anopheles gambiae cytochrome P450
           protein.
          Length = 509

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +3

Query: 57  AIVIAVRIGNDDHLQIVVGRIHEVVRVRCRLGVR 158
           A+ + V++ +DD     +  +H+ V  R R GV+
Sbjct: 233 AVKLGVKVTDDDLEAFFMNLVHDTVEHRERNGVQ 266


>DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2
           protein.
          Length = 961

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = -1

Query: 197 LFLSGCYKNGIMKTDAQSTSNTHNFMYSPDNNLEVVIITNSDGDHD 60
           +F  G  ++    T A + +N H+   + DN+ +   + N   D D
Sbjct: 745 VFYGGKREDENEDTKADNMNNNHSDQLTGDNSADERAVPNDADDDD 790


>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -3

Query: 102  SGGGHHYQFGRRSRW 58
            SGGGH    G  SRW
Sbjct: 1425 SGGGHTGPAGLISRW 1439


>AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific
           transcription factor FRU-MA protein.
          Length = 960

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -3

Query: 138 EHAQLHVFSRQQSGGGHHYQ 79
           EH QL    +QQ    HH Q
Sbjct: 237 EHEQLERLQQQQQQQTHHQQ 256


>AY785360-1|AAV52864.1|  759|Anopheles gambiae male-specific
           transcription factor FRU-MB protein.
          Length = 759

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -3

Query: 138 EHAQLHVFSRQQSGGGHHYQ 79
           EH QL    +QQ    HH Q
Sbjct: 237 EHEQLERLQQQQQQQTHHQQ 256


>AY725820-1|AAU50568.1|  593|Anopheles gambiae fruitless
           female-specific zinc-fingerC isoform protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -3

Query: 138 EHAQLHVFSRQQSGGGHHYQ 79
           EH QL    +QQ    HH Q
Sbjct: 189 EHEQLERLQQQQQQQTHHQQ 208


>AY725819-1|AAU50567.1|  569|Anopheles gambiae fruitless
           male-specific zinc-fingerC isoform protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -3

Query: 138 EHAQLHVFSRQQSGGGHHYQ 79
           EH QL    +QQ    HH Q
Sbjct: 237 EHEQLERLQQQQQQQTHHQQ 256


>Y09951-1|CAA71082.1|  107|Anopheles gambiae histone H2a protein.
          Length = 107

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 96  LQIVVGRIHEVVR 134
           LQ  VGRIH ++R
Sbjct: 8   LQFPVGRIHRLLR 20


>AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal
           growth factor receptorprotein.
          Length = 1433

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -2

Query: 43  PPPPKSCHLLLASG 2
           P P + CHL  A G
Sbjct: 196 PKPRECCHLFCAGG 209


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 7/25 (28%), Positives = 12/25 (48%)
 Frame = -3

Query: 123 HVFSRQQSGGGHHYQFGRRSRWLFG 49
           H+ + +  GGG H+     S  + G
Sbjct: 421 HLHNHRSGGGGRHHHHHHHSALVRG 445


>AY578812-1|AAT07317.1|  932|Anopheles gambiae wishful thinking
           protein.
          Length = 932

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -1

Query: 188 SGCYKNGIMKTDAQSTSNTHN 126
           +G YK G + +   ++S TH+
Sbjct: 624 TGSYKYGKLSSSGGASSTTHS 644


>AY263175-1|AAP78790.1|  814|Anopheles gambiae TmcA-like protein
           protein.
          Length = 814

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 127 LCVFDVDWASVFIIP 171
           LCV  V +A VF+ P
Sbjct: 612 LCVLPVSYAIVFLEP 626


>AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1022

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +2

Query: 32  WRRRLVPN 55
           W RRL+PN
Sbjct: 871 WTRRLIPN 878


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 240,674
Number of Sequences: 2352
Number of extensions: 4565
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 563,979
effective HSP length: 45
effective length of database: 458,139
effective search space used: 10079058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)