Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18c08
         (316 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p...    26   1.5  
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    24   4.7  
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha...    24   6.3  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    23   8.3  
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    23   8.3  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    23   8.3  

>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 612

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 92  WSDLYDRLTSISLT 133
           W DLY RLT ++LT
Sbjct: 358 WEDLYKRLTGVTLT 371


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 193 YCLNCTIPSKKCSNSP 240
           +CLNCT  +++C   P
Sbjct: 52  FCLNCTKTNRECEGYP 67


>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +3

Query: 21  LLITDNYYKPT*ESEIIFTSCIHHGPTFMI 110
           L +TD ++    +  + F  C HHG T ++
Sbjct: 126 LELTDTFFLVLRKKPLQFLHCYHHGATAVL 155


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 68   NFYILHTSWSDLYDRLTSISL 130
            +F++L T W +LY  LTS +L
Sbjct: 1020 DFFVLVTLWINLYAVLTSHAL 1040


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 181 RLFRYCLNCTIPSKKCSNSP*CMS 252
           R+FR C +C     KC+    C+S
Sbjct: 34  RVFRACKHCRQKKIKCNGGQPCIS 57


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 172 YN*RLFRYCLNCTIPSKKC 228
           +N +LF YC    I SKKC
Sbjct: 652 HNQQLFNYCQLTDILSKKC 670


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,108,268
Number of Sequences: 5004
Number of extensions: 17634
Number of successful extensions: 29
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)