Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18c08
         (316 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL365192-2|CAI20530.1|  819|Homo sapiens RP3-421H19.2 protein.         28   5.0  
AL365192-1|CAI20531.1|  832|Homo sapiens RP3-421H19.2 protein.         28   5.0  
AK093629-1|BAC04207.1|  491|Homo sapiens protein ( Homo sapiens ...    28   5.0  

>AL365192-2|CAI20530.1|  819|Homo sapiens RP3-421H19.2 protein.
          Length = 819

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +2

Query: 53  LRVGNNFYILHTSWSDLYDRLTSISLTLH 139
           L+ GNN   LHTS++ LY  LT  S+  H
Sbjct: 185 LKSGNNLLWLHTSFAFLYLLLTVYSMRRH 213



 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +2

Query: 80  LHTSWSDLYDRLTSISLTLH*DQKDDYNWKTITNVY 187
           +H    D Y+RLTS+S ++  DQ+D+     +T ++
Sbjct: 85  MHGDSHDRYERLTSVSSSVDFDQRDNGFCSWLTAIF 120


>AL365192-1|CAI20531.1|  832|Homo sapiens RP3-421H19.2 protein.
          Length = 832

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +2

Query: 53  LRVGNNFYILHTSWSDLYDRLTSISLTLH 139
           L+ GNN   LHTS++ LY  LT  S+  H
Sbjct: 198 LKSGNNLLWLHTSFAFLYLLLTVYSMRRH 226



 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +2

Query: 80  LHTSWSDLYDRLTSISLTLH*DQKDDYNWKTITNVY 187
           +H    D Y+RLTS+S ++  DQ+D+     +T ++
Sbjct: 98  MHGDSHDRYERLTSVSSSVDFDQRDNGFCSWLTAIF 133


>AK093629-1|BAC04207.1|  491|Homo sapiens protein ( Homo sapiens
           cDNA FLJ36310 fis, clone THYMU2005001. ).
          Length = 491

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +2

Query: 53  LRVGNNFYILHTSWSDLYDRLTSISLTLH 139
           L+ GNN   LHTS++ LY  LT  S+  H
Sbjct: 198 LKSGNNLLWLHTSFAFLYLLLTVYSMRRH 226



 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +2

Query: 80  LHTSWSDLYDRLTSISLTLH*DQKDDYNWKTITNVY 187
           +H    D Y+RLTS+S ++  DQ+D+     +T ++
Sbjct: 98  MHGDSHDRYERLTSVSSSVDFDQRDNGFCSWLTAIF 133


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,866,548
Number of Sequences: 237096
Number of extensions: 560915
Number of successful extensions: 638
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1453211950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)