Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18c08
         (316 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81568-7|CAD18874.1|  497|Caenorhabditis elegans Hypothetical pr...    26   6.6  
Z81568-5|CAB04597.1|  522|Caenorhabditis elegans Hypothetical pr...    26   6.6  
AC024770-8|AAF59486.1|  740|Caenorhabditis elegans Hypothetical ...    26   6.6  
AC006648-5|AAF39853.1|  701|Caenorhabditis elegans Hypothetical ...    26   6.6  

>Z81568-7|CAD18874.1|  497|Caenorhabditis elegans Hypothetical
           protein K08E3.5d protein.
          Length = 497

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +2

Query: 89  SWSDLYDRLTSISLTLH*DQKDDYNWKTITNV 184
           S S+   RL S   T H DQK    WKT T +
Sbjct: 11  SVSNSRTRLISFRETEHGDQKSSEEWKTSTKL 42


>Z81568-5|CAB04597.1|  522|Caenorhabditis elegans Hypothetical
           protein K08E3.5b protein.
          Length = 522

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +2

Query: 89  SWSDLYDRLTSISLTLH*DQKDDYNWKTITNV 184
           S S+   RL S   T H DQK    WKT T +
Sbjct: 11  SVSNSRTRLISFRETEHGDQKSSEEWKTSTKL 42


>AC024770-8|AAF59486.1|  740|Caenorhabditis elegans Hypothetical
           protein Y39H10A.2 protein.
          Length = 740

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/48 (25%), Positives = 26/48 (54%)
 Frame = +2

Query: 53  LRVGNNFYILHTSWSDLYDRLTSISLTLH*DQKDDYNWKTITNVYFAI 196
           +RV + F+++    S++   + +  + L+   KD Y    I+N YF++
Sbjct: 305 IRVISTFWVIFGHCSEITFMVITNPIDLYDFTKDTYTGTLISNAYFSV 352


>AC006648-5|AAF39853.1|  701|Caenorhabditis elegans Hypothetical
           protein F59H6.2 protein.
          Length = 701

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
 Frame = +1

Query: 169 DYN*RLFRYCLNC---TIPSKKCSN 234
           DY+ R++RYC +C      S+KC N
Sbjct: 173 DYDMRVYRYCASCGNMLTESQKCVN 197


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,039,160
Number of Sequences: 27780
Number of extensions: 96148
Number of successful extensions: 132
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 355337994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)