Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18c03
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    27   2.0  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    25   8.1  
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ...    25   8.1  
SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|ch...    25   8.1  

>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -3

Query: 331 DDKATFESLFH-LLNYVTSLEVNSDGQMLKLDEGDKIEDFDESTL 200
           +DK+  +S F  L   ++ L VNS GQ+ K D  +    F ES+L
Sbjct: 621 NDKSLKQSPFQKLTRRLSDLSVNSSGQISKQDFDNSNSIFSESSL 665


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = -3

Query: 382  REIIEFMPEFFSDMVETDDKATFESLFHLL 293
            R +I F    F++++++  +  FE+L+H+L
Sbjct: 1271 RHLIGFQSRQFTNVLQSSAEVMFENLWHIL 1300


>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 25/85 (29%), Positives = 42/85 (49%)
 Frame = +3

Query: 297 K*NRDSNVALSSVSTISEKNSGINSMISLDVVLSKLSKYAVRNVRDMSSGNSRGNMLL*P 476
           K  +DS +A      +  K+  + S+++   V  K  ++AV NVR    GN R +     
Sbjct: 103 KTQKDSYIAQDHFIAVFTKDDTLKSLLAEAGVTPKAFEFAVNNVR----GNKRID----- 153

Query: 477 NGSHSAKTKSASVNKMSTMPMTELA 551
             S +A+    ++NK  T+ +TELA
Sbjct: 154 --SKNAEEGFDALNKF-TVDLTELA 175


>SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 222 RILTNLLWWGKR*PLARYTLAWSL 151
           ++ TN LWWG R  L R +L +SL
Sbjct: 134 QVRTNTLWWG-RDRLGRRSLLYSL 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,732,963
Number of Sequences: 5004
Number of extensions: 52174
Number of successful extensions: 146
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)