Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18c03
(714 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0403 - 2938242-2941334 29 2.8
06_01_0115 - 901385-901495,902134-902163,902847-902927,903019-90... 28 6.4
04_04_1193 + 31634043-31634349,31634685-31634847,31635048-316366... 28 6.4
10_03_0010 + 7007694-7007888,7007994-7008059,7008161-7008334,700... 28 8.5
09_04_0101 + 14611622-14613133 28 8.5
05_03_0520 + 14956476-14958179 28 8.5
04_04_1188 + 31579833-31579914,31580001-31580176,31580822-315809... 28 8.5
02_01_0429 - 3132848-3135043 28 8.5
02_01_0425 - 3102629-3104692,3106505-3108546,3109918-3109989,311... 28 8.5
>02_01_0403 - 2938242-2941334
Length = 1030
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = -3
Query: 478 FGYNNMFPREFPDDMSRTFLTAYFESLDNTTSREI---IEFMPEFFSDMVE 335
F YNN F + PD +S Y + N+ S EI + MP F +D VE
Sbjct: 462 FLYNNQFTGQIPDWISSLNFLFYLDLSSNSLSGEIPKALMEMPMFKTDNVE 512
>06_01_0115 -
901385-901495,902134-902163,902847-902927,903019-903084,
903207-903284,904708-904791,904881-904970,905069-905345,
905765-905973
Length = 341
Score = 28.3 bits (60), Expect = 6.4
Identities = 24/71 (33%), Positives = 34/71 (47%)
Frame = -3
Query: 331 DDKATFESLFHLLNYVTSLEVNSDGQMLKLDEGDKIEDFDESTLVGKALATSSLYTRMEF 152
DD+ E L H VT L S+ ++ KL D ED + V ++LAT MEF
Sbjct: 120 DDQRAIEILTH---EVTDLLKRSEKRLQKLSMKDSSEDSNVRKNVQRSLATDLQSLSMEF 176
Query: 151 MQYTFRQNTIL 119
+ +Q+T L
Sbjct: 177 RK---KQSTYL 184
>04_04_1193 + 31634043-31634349,31634685-31634847,31635048-31636622,
31636653-31637541,31639401-31641266
Length = 1599
Score = 28.3 bits (60), Expect = 6.4
Identities = 19/63 (30%), Positives = 32/63 (50%)
Frame = +3
Query: 258 PSELTSKDVT*FNK*NRDSNVALSSVSTISEKNSGINSMISLDVVLSKLSKYAVRNVRDM 437
PSELTS+D T N+ N ++ +++ ++ M+ VL KLS + +R +
Sbjct: 1117 PSELTSEDTTGANR-NALPSLECLDIASCGINGKWLSLMLQHAEVLQKLSITSCWQIRGL 1175
Query: 438 SSG 446
S G
Sbjct: 1176 SIG 1178
>10_03_0010 +
7007694-7007888,7007994-7008059,7008161-7008334,
7009232-7009306,7009384-7009510,7012280-7012371,
7012496-7012566,7012683-7012792,7013016-7013053,
7013825-7013960,7014382-7014456,7014574-7014697,
7014917-7015013,7015426-7015451,7016180-7016255,
7016499-7016636,7016735-7016872
Length = 585
Score = 27.9 bits (59), Expect = 8.5
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Frame = -3
Query: 406 ESLDNTTSREIIEFMPEFFSDMVETDDKATFESLFH-LLNYVTSLEVNSDGQMLKLDEGD 230
+ ++ S + + F FSD V +D+ TFE+ +L+Y + + L EG
Sbjct: 153 DDIEFAVSPDALRFTTPKFSDFVSSDEMETFENGKEVILDYCNFRTACT--TLPTLQEGH 210
Query: 229 KIEDFDESTLVG--KALATSSLYTRMEFMQ 146
IEDF + G K L T + FMQ
Sbjct: 211 VIEDFYFPLITGFSKTLPTGQCLDK--FMQ 238
>09_04_0101 + 14611622-14613133
Length = 503
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = -2
Query: 545 LRHRHCAHFIDAGRFGFGAMGPVRLQQHVSARVSRRHVAH 426
LR H AH + +GRF ++GPV L++ +S H+AH
Sbjct: 22 LRQIH-AHLLTSGRFP--SLGPVLLRRLISLPNPHLHLAH 58
>05_03_0520 + 14956476-14958179
Length = 567
Score = 27.9 bits (59), Expect = 8.5
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Frame = -3
Query: 469 NNMFPREFPDDMSRT-FLTAYFESL----DNTTSREIIEFMPEFFSDMVETDDKATFESL 305
N FP F +D+S F TA SL D E+ + MP+ S D F L
Sbjct: 376 NYEFPESFEEDLSCIDFATANASSLGFPMDGYPMDELFDDMPDQGSSGAMDDSSVVFRDL 435
Query: 304 FHLLNYVTSLEVNSDG 257
L+N + E ++ G
Sbjct: 436 PGLINLPAAEEADAIG 451
>04_04_1188 +
31579833-31579914,31580001-31580176,31580822-31580923,
31581015-31581245,31581821-31581922,31582092-31582184,
31582275-31582379,31582455-31582514,31582621-31582698,
31582778-31582924,31583011-31583109,31583178-31583267,
31583360-31583451,31583529-31583646,31583783-31583871,
31583998-31584088,31584203-31584294,31584442-31584749,
31584866-31584897
Length = 728
Score = 27.9 bits (59), Expect = 8.5
Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Frame = +2
Query: 524 EHNADDG--AGFDSNSS*RFGSRGQRFDGN--RVERVHYRGFVSLSQDARGH 667
++N + G G D NSS R G RG R DG+ R +R RGF + RGH
Sbjct: 654 DNNREGGFSGGRDFNSSGRGGRRGGRGDGSRGRGDRGRGRGF---GRGDRGH 702
>02_01_0429 - 3132848-3135043
Length = 731
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/94 (19%), Positives = 34/94 (36%)
Frame = -3
Query: 475 GYNNMFPREFPDDMSRTFLTAYFESLDNTTSREIIEFMPEFFSDMVETDDKATFESLFHL 296
G+ P E + L F S T + I D+ + T +
Sbjct: 566 GFTGAIPPEISQLKALDMLNLSFNSFSGETPQAICNLTKLVMLDLSNNNLTGTIPLELNK 625
Query: 295 LNYVTSLEVNSDGQMLKLDEGDKIEDFDESTLVG 194
LN++++ V ++ + G + + FD S+ G
Sbjct: 626 LNFLSAFNVYNNDLEGAIPTGGQFDTFDNSSFTG 659
>02_01_0425 - 3102629-3104692,3106505-3108546,3109918-3109989,
3110157-3111444
Length = 1821
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/94 (19%), Positives = 34/94 (36%)
Frame = -3
Query: 475 GYNNMFPREFPDDMSRTFLTAYFESLDNTTSREIIEFMPEFFSDMVETDDKATFESLFHL 296
G+ P E + L F S T + I D+ + T +
Sbjct: 989 GFTGAIPPEISQLKALDMLNLSFNSFSGETPQAICNLTKLVMLDLSNNNLTGTIPLELNK 1048
Query: 295 LNYVTSLEVNSDGQMLKLDEGDKIEDFDESTLVG 194
LN++++ V ++ + G + + FD S+ G
Sbjct: 1049 LNFLSAFNVYNNDLEGAIPTGGQFDTFDNSSFTG 1082
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,251,618
Number of Sequences: 37544
Number of extensions: 328164
Number of successful extensions: 883
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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