Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18c03
(714 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L07144-7|AAK21444.2| 646|Caenorhabditis elegans Hypothetical pr... 31 0.82
Z73103-7|CAA97428.1| 416|Caenorhabditis elegans Hypothetical pr... 29 3.3
AY204176-1|AAO39180.1| 409|Caenorhabditis elegans nuclear recep... 29 3.3
AL021175-4|CAA15971.1| 356|Caenorhabditis elegans Hypothetical ... 29 3.3
U80837-7|AAB37907.1| 760|Caenorhabditis elegans Hypothetical pr... 29 4.4
U28409-5|AAC46591.1| 246|Caenorhabditis elegans Hypothetical pr... 29 4.4
U80454-6|AAB37879.1| 786|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z95559-7|CAB76730.2| 329|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z74043-10|CAA98542.2| 653|Caenorhabditis elegans Hypothetical p... 28 7.6
U97015-6|AAB52345.2| 1064|Caenorhabditis elegans Hypothetical pr... 28 7.6
AY241928-1|AAO85277.1| 806|Caenorhabditis elegans xylosyltransf... 28 7.6
AJ496235-1|CAD42732.1| 806|Caenorhabditis elegans peptide O-xyl... 28 7.6
AC025722-4|AAK68509.3| 806|Caenorhabditis elegans Squashed vulv... 28 7.6
>L07144-7|AAK21444.2| 646|Caenorhabditis elegans Hypothetical
protein R05D3.9 protein.
Length = 646
Score = 31.1 bits (67), Expect = 0.82
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -2
Query: 635 SRDSALVQRDCHQNADHDCQSVNSNCYQSQLRHRH 531
S D+ L CH NAD CQ +NS Y + + +R+
Sbjct: 301 SEDTLLAHVPCHDNADF-CQGLNSEDYHTVVSYRN 334
>Z73103-7|CAA97428.1| 416|Caenorhabditis elegans Hypothetical
protein C08F8.8 protein.
Length = 416
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = -3
Query: 364 MPEFFSDMVETDDKATFESLFHLLNYVTSLEVNSDGQMLKLDEGDKIEDFDEST 203
MP DM + + T SLF + N+ +L + + +EG+ IE+ D++T
Sbjct: 296 MPRLIQDMFKPPQQPTPTSLFPMANF--NLNFLLKQEKTETEEGEDIEEEDDAT 347
>AY204176-1|AAO39180.1| 409|Caenorhabditis elegans nuclear receptor
NHR-67 protein.
Length = 409
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = -3
Query: 364 MPEFFSDMVETDDKATFESLFHLLNYVTSLEVNSDGQMLKLDEGDKIEDFDEST 203
MP DM + + T SLF + N+ +L + + +EG+ IE+ D++T
Sbjct: 289 MPRLIQDMFKPPQQPTPTSLFPMANF--NLNFLLKQEKTETEEGEDIEEEDDAT 340
>AL021175-4|CAA15971.1| 356|Caenorhabditis elegans Hypothetical
protein Y6E2A.5 protein.
Length = 356
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/87 (20%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Frame = -3
Query: 472 YNNMFPREFPDDMSRTFLTAYFESLDNTTSREIIEFMPEFFSDMVETD-DKATFESLFHL 296
Y +F E +++ +L F + ++ + F ++ + DK +F + +L
Sbjct: 251 YTLVFDFEMLQELAYKYLDKLFLKVLQKQISQVATKLCNFIEELGHYENDKESFARIQNL 310
Query: 295 LNYVTSLEVNSDGQMLKLDEGDKIEDF 215
+++ LE+ S ++ + E +KIED+
Sbjct: 311 ESHIDPLEIPSTTKLRLMCETEKIEDY 337
>U80837-7|AAB37907.1| 760|Caenorhabditis elegans Hypothetical
protein F07E5.8 protein.
Length = 760
Score = 28.7 bits (61), Expect = 4.4
Identities = 21/92 (22%), Positives = 39/92 (42%)
Frame = -3
Query: 349 SDMVETDDKATFESLFHLLNYVTSLEVNSDGQMLKLDEGDKIEDFDESTLVGKALATSSL 170
SD+ + K F HL+ Y+ + N +G + K+D+ I D + S + SL
Sbjct: 349 SDIPNFEYKPRFPQKLHLIGYIVQIINNKNGILDKIDD---ISDKNSSDFKQISELIMSL 405
Query: 169 YTRMEFMQYTFRQNTILSMNKKNNNFNQIIMG 74
E ++ ++ M + N +I+ G
Sbjct: 406 QHNFEVLRNGDMDGELIEMMEFQNVVPEIVSG 437
>U28409-5|AAC46591.1| 246|Caenorhabditis elegans Hypothetical
protein T25D10.4 protein.
Length = 246
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -3
Query: 250 LKLDEGDKIEDFDESTLVGKALATSSLYTRMEFMQYTFRQNTIL 119
L+ DE D+ ED +S A ++LY E Q+ RQN++L
Sbjct: 102 LEYDEEDEKEDKFDSGFSASMSAVTNLYVDDERPQFFSRQNSVL 145
>U80454-6|AAB37879.1| 786|Caenorhabditis elegans Hypothetical
protein T16A1.2 protein.
Length = 786
Score = 28.3 bits (60), Expect = 5.8
Identities = 26/111 (23%), Positives = 45/111 (40%)
Frame = -3
Query: 406 ESLDNTTSREIIEFMPEFFSDMVETDDKATFESLFHLLNYVTSLEVNSDGQMLKLDEGDK 227
ES N T+ E + + SD+ + HL+ Y+ + N +G + K+D+
Sbjct: 357 ESFINKTT-EACGLVKDVNSDIPNLKYNSLLPQKLHLIGYIVQVINNKNGILDKIDD--- 412
Query: 226 IEDFDESTLVGKALATSSLYTRMEFMQYTFRQNTILSMNKKNNNFNQIIMG 74
I D + S + SL E ++ + I M K N +I+ G
Sbjct: 413 ISDNNSSDFKKISGLIMSLRHHFEILKSGDMKKEITEMMKYQNAIPEIVSG 463
>Z95559-7|CAB76730.2| 329|Caenorhabditis elegans Hypothetical
protein Y41E3.14 protein.
Length = 329
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 83 YLIKIVVFFVHRQYCVLPKRVLH 151
YL ++FF++ YCVL K++ H
Sbjct: 208 YLFVAIMFFLYITYCVLIKKLAH 230
>Z74043-10|CAA98542.2| 653|Caenorhabditis elegans Hypothetical
protein T19B10.3 protein.
Length = 653
Score = 27.9 bits (59), Expect = 7.6
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Frame = -3
Query: 346 DMVETDDKATFESLFHLLNYVT-SLEVNSDGQMLKLDEGDKIEDFDESTLVGKALATSSL 170
D VETD +FE+L H L V ++NS G + GD + + L GK + T
Sbjct: 415 DCVETDKPISFETLKHPLGLVAYQAKINSCGNLTIPSFGDFVHVY----LNGKYIDT--- 467
Query: 169 YTRMEFMQYTFRQNTILSMNKKNNNFNQIIM 77
TR Y +N+++ N N++ M
Sbjct: 468 LTR---RYYNLTRNSVIIEGCLENEENRLFM 495
>U97015-6|AAB52345.2| 1064|Caenorhabditis elegans Hypothetical
protein F48C1.1 protein.
Length = 1064
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = -3
Query: 484 DPFGYNNMFPREF-PDDMSRTFLTAYFESLDNT-TSREIIEFMPEFFSDMVETDDKAT 317
DPFGY+N P F + RT + L T S++ I F + D DD T
Sbjct: 259 DPFGYSNSVPYLFKKSGVHRTVINRIHHKLKQTLQSQKAIPFKWRQYFDATGEDDVLT 316
>AY241928-1|AAO85277.1| 806|Caenorhabditis elegans
xylosyltransferase protein.
Length = 806
Score = 27.9 bits (59), Expect = 7.6
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Frame = -3
Query: 340 VETDDKATFESLFHLLNYVTSLE----VNSDGQMLK-LDEGDKIEDFDE--STLVGKALA 182
+ET D ATFE L H L++V E + G +L+ + G K E +E +G
Sbjct: 595 IETTDGATFEFLIHRLSHVNLTENEEKLVEHGYLLRAVSFGTKFEWKEELCREYMGFVTD 654
Query: 181 TSSLYTRMEF 152
+L+TR+++
Sbjct: 655 NDTLHTRLQW 664
>AJ496235-1|CAD42732.1| 806|Caenorhabditis elegans peptide
O-xylosyltransferase protein.
Length = 806
Score = 27.9 bits (59), Expect = 7.6
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Frame = -3
Query: 340 VETDDKATFESLFHLLNYVTSLE----VNSDGQMLK-LDEGDKIEDFDE--STLVGKALA 182
+ET D ATFE L H L++V E + G +L+ + G K E +E +G
Sbjct: 595 IETTDGATFEFLIHRLSHVNLTENEEKLVEHGYLLRAVSFGTKFEWKEELCREYMGFVTD 654
Query: 181 TSSLYTRMEF 152
+L+TR+++
Sbjct: 655 NDTLHTRLQW 664
>AC025722-4|AAK68509.3| 806|Caenorhabditis elegans Squashed vulva
protein 6 protein.
Length = 806
Score = 27.9 bits (59), Expect = 7.6
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Frame = -3
Query: 340 VETDDKATFESLFHLLNYVTSLE----VNSDGQMLK-LDEGDKIEDFDE--STLVGKALA 182
+ET D ATFE L H L++V E + G +L+ + G K E +E +G
Sbjct: 595 IETTDGATFEFLIHRLSHVNLTENEEKLVEHGYLLRAVSFGTKFEWKEELCREYMGFVTD 654
Query: 181 TSSLYTRMEF 152
+L+TR+++
Sbjct: 655 NDTLHTRLQW 664
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,092,090
Number of Sequences: 27780
Number of extensions: 296244
Number of successful extensions: 864
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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