Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18c02
         (479 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73906-7|CAA98119.2|  428|Caenorhabditis elegans Hypothetical pr...    29   1.3  
U41271-3|AAP31439.1|  577|Caenorhabditis elegans Hypothetical pr...    28   4.0  
U41271-2|AAA82444.3|  713|Caenorhabditis elegans Hypothetical pr...    28   4.0  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>Z73906-7|CAA98119.2|  428|Caenorhabditis elegans Hypothetical
           protein D2030.7 protein.
          Length = 428

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 204 IKCRTVFTTSLLVTCPTSIKPIRT 275
           ++C+ VF TS + T P S  P+RT
Sbjct: 163 VECQNVFPTSFIKTEPVSTSPVRT 186


>U41271-3|AAP31439.1|  577|Caenorhabditis elegans Hypothetical
           protein C46H3.2b protein.
          Length = 577

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 218 GVHHFPVGNLSDFNQTDKNCKF 283
           G+HH   GNLS FN +  N +F
Sbjct: 489 GLHHISSGNLSSFNSSLSNDQF 510


>U41271-2|AAA82444.3|  713|Caenorhabditis elegans Hypothetical
           protein C46H3.2a protein.
          Length = 713

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 218 GVHHFPVGNLSDFNQTDKNCKF 283
           G+HH   GNLS FN +  N +F
Sbjct: 625 GLHHISSGNLSSFNSSLSNDQF 646


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 1/97 (1%)
 Frame = +2

Query: 107  YQSTIYYQSKYSWIILKQDF-VIME*DGSGDDRNQVQDGVHHFPVGNLSDFNQTDKNCKF 283
            ++ TI Y++K+ W  LK     ++    S     +  +  + +       F+  DK C  
Sbjct: 6662 FKITISYETKFVWEFLKYSLHSLIAYQPSYRTVFKSGNSPYQYICSLTESFHDFDKRCNL 6721

Query: 284  QTIVRRHANHFFWSFYVTKRR*F*VRHD*ICHNSLMH 394
               +    NH F     T  R   VR    C NS +H
Sbjct: 6722 NNAISHEPNHLFEIGKSTPLR---VRVAEDCDNSRIH 6755


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,579,493
Number of Sequences: 27780
Number of extensions: 209440
Number of successful extensions: 367
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)