Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18b17
         (832 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82059-6|CAB04874.1|  300|Caenorhabditis elegans Hypothetical pr...    45   6e-05
X76112-1|CAA53718.1|  300|Caenorhabditis elegans ADP/ATP translo...    45   6e-05
Z68218-2|CAA92472.1|  313|Caenorhabditis elegans Hypothetical pr...    44   1e-04
U80931-5|AAB38001.1|  313|Caenorhabditis elegans Hypothetical pr...    44   1e-04
AF003141-4|AAK21485.1|  300|Caenorhabditis elegans Hypothetical ...    39   0.005
Z68882-2|CAA93110.1|  306|Caenorhabditis elegans Hypothetical pr...    36   0.047
U64842-4|AAB37086.2|  306|Caenorhabditis elegans Hypothetical pr...    34   0.14 
Z49207-2|CAA89069.1|  298|Caenorhabditis elegans Hypothetical pr...    31   1.0  
Z81577-1|CAB04651.3|  289|Caenorhabditis elegans Hypothetical pr...    28   9.4  
Z81069-3|CAB02989.1|  352|Caenorhabditis elegans Hypothetical pr...    28   9.4  

>Z82059-6|CAB04874.1|  300|Caenorhabditis elegans Hypothetical
           protein T27E9.1a protein.
          Length = 300

 Score = 45.2 bits (102), Expect = 6e-05
 Identities = 20/27 (74%), Positives = 22/27 (81%)
 Frame = -3

Query: 830 KGAFSNVLRGTGGAFVLVLYDEIKKVL 750
           KGA SNV RGTGGA VL +YDEI+K L
Sbjct: 274 KGALSNVFRGTGGALVLAIYDEIQKFL 300


>X76112-1|CAA53718.1|  300|Caenorhabditis elegans ADP/ATP
           translocase protein.
          Length = 300

 Score = 45.2 bits (102), Expect = 6e-05
 Identities = 20/27 (74%), Positives = 22/27 (81%)
 Frame = -3

Query: 830 KGAFSNVLRGTGGAFVLVLYDEIKKVL 750
           KGA SNV RGTGGA VL +YDEI+K L
Sbjct: 274 KGALSNVFRGTGGALVLAIYDEIQKFL 300


>Z68218-2|CAA92472.1|  313|Caenorhabditis elegans Hypothetical
           protein K01H12.2 protein.
          Length = 313

 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 19/27 (70%), Positives = 22/27 (81%)
 Frame = -3

Query: 830 KGAFSNVLRGTGGAFVLVLYDEIKKVL 750
           KGA SNV RGTGGA VL +YDEI+K +
Sbjct: 287 KGALSNVFRGTGGALVLAIYDEIQKFI 313


>U80931-5|AAB38001.1|  313|Caenorhabditis elegans Hypothetical
           protein T01B11.4 protein.
          Length = 313

 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 19/27 (70%), Positives = 22/27 (81%)
 Frame = -3

Query: 830 KGAFSNVLRGTGGAFVLVLYDEIKKVL 750
           KGA SNV RGTGGA VL +YDEI+K +
Sbjct: 287 KGALSNVFRGTGGALVLAIYDEIQKFI 313


>AF003141-4|AAK21485.1|  300|Caenorhabditis elegans Hypothetical
           protein W02D3.6 protein.
          Length = 300

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 16/27 (59%), Positives = 20/27 (74%)
 Frame = -3

Query: 830 KGAFSNVLRGTGGAFVLVLYDEIKKVL 750
           KG  SNV R TGGA VL +YDEI+ ++
Sbjct: 274 KGGLSNVFRATGGALVLTIYDEIQHLI 300


>Z68882-2|CAA93110.1|  306|Caenorhabditis elegans Hypothetical
           protein C47E12.2 protein.
          Length = 306

 Score = 35.5 bits (78), Expect = 0.047
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = -3

Query: 830 KGAFSNVLRGTGGAFVLVLYDEIKK 756
           KGA +N+ R  GGA V+ LY+EI K
Sbjct: 280 KGALANIFRSAGGALVMALYEEIHK 304


>U64842-4|AAB37086.2|  306|Caenorhabditis elegans Hypothetical
           protein F25B4.7 protein.
          Length = 306

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = -3

Query: 827 GAFSNVLRGTGGAFVLVLYDEIKKVL 750
           GA  N +RGTG A VL +Y+E++K +
Sbjct: 281 GALVNAIRGTGAALVLAIYNELQKYM 306


>Z49207-2|CAA89069.1|  298|Caenorhabditis elegans Hypothetical
           protein R07E3.4 protein.
          Length = 298

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 830 KGAFSNVLRGTGGAFVLVLYDEIKKVL 750
           +GA +N LR TGGA ++  Y E  K +
Sbjct: 272 RGALTNSLRSTGGALIITFYYEFSKYM 298


>Z81577-1|CAB04651.3|  289|Caenorhabditis elegans Hypothetical
           protein R11.1 protein.
          Length = 289

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -3

Query: 830 KGAFSNVLR-GTGGAFVLVLYDEI 762
           KG    V+R G GGA +L++YDE+
Sbjct: 258 KGLLPKVMRLGPGGAVMLIVYDEV 281


>Z81069-3|CAB02989.1|  352|Caenorhabditis elegans Hypothetical
           protein F25H9.3 protein.
          Length = 352

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 123 VNY*VQHTNLTSHKCQRYII 182
           +NY  Q TNL + KC RY++
Sbjct: 13  INYFTQFTNLEAVKCHRYVL 32


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,476,678
Number of Sequences: 27780
Number of extensions: 351287
Number of successful extensions: 551
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)