Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18b15
         (475 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY099352-1|AAM34494.1|  891|Caenorhabditis elegans gamma-tubulin...    28   3.9  
AF040644-1|AAB94969.2|  891|Caenorhabditis elegans Gamma-tubulin...    28   3.9  
AF106592-4|AAK21366.1|  786|Caenorhabditis elegans Hypothetical ...    27   5.2  
Z29095-10|CAA82356.3|  163|Caenorhabditis elegans Hypothetical p...    27   6.9  
Z70212-5|CAA94165.3|  320|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical pr...    27   9.1  
AF288812-1|AAG10199.1|  566|Caenorhabditis elegans synembryn pro...    27   9.1  
AF098992-6|AAC67456.2|  182|Caenorhabditis elegans Hypothetical ...    27   9.1  
AC084158-34|AAK68564.1|  566|Caenorhabditis elegans Resistance t...    27   9.1  

>AY099352-1|AAM34494.1|  891|Caenorhabditis elegans gamma-tubulin
           ring protein GRIP-1 protein.
          Length = 891

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -1

Query: 232 NDITPNKTESLKILSTQSVGARNLLEPMQANETKIKLNRI 113
           ND    K    +I   +++GARNL++    N T+ KLN +
Sbjct: 840 NDENARKARIAEICQKKTIGARNLMD--SVNTTQRKLNEL 877


>AF040644-1|AAB94969.2|  891|Caenorhabditis elegans Gamma-tubulin
           interacting proteinprotein 1, isoform a protein.
          Length = 891

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -1

Query: 232 NDITPNKTESLKILSTQSVGARNLLEPMQANETKIKLNRI 113
           ND    K    +I   +++GARNL++    N T+ KLN +
Sbjct: 840 NDENARKARIAEICQKKTIGARNLMD--SVNTTQRKLNEL 877


>AF106592-4|AAK21366.1|  786|Caenorhabditis elegans Hypothetical
           protein D1037.1 protein.
          Length = 786

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 13/51 (25%), Positives = 30/51 (58%)
 Frame = -1

Query: 169 RNLLEPMQANETKIKLNRIETVNVLDFLGRRLRQHDPR**LQSKCAVRRSR 17
           ++LL  ++++E    ++++   +  DF+G+R ++H      +SK   RRS+
Sbjct: 18  KDLLNDVKSSEKPFSVDKLAGCDQTDFVGKRPKKHHRHKSKKSKKVRRRSK 68


>Z29095-10|CAA82356.3|  163|Caenorhabditis elegans Hypothetical
           protein R10E11.9 protein.
          Length = 163

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = +1

Query: 286 CRRPPFAFAPKGLPAVC-CGGFFVFATCC 369
           CRRP +  +P+  P  C    FF +  CC
Sbjct: 30  CRRPWYFNSPRPAPMRCPTASFFTYYECC 58


>Z70212-5|CAA94165.3|  320|Caenorhabditis elegans Hypothetical
           protein R04D3.7 protein.
          Length = 320

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 81  LPKKSNTLTVSILFNLILVSLAC 149
           LPKK+  + + ++F +I VS+AC
Sbjct: 121 LPKKNIWIVICVIFAIISVSVAC 143


>Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical
           protein F40F8.10 protein.
          Length = 189

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = -1

Query: 169 RNLLEPMQANETKIKLNRIETVNVLDFLGRRLR 71
           R L++    +ETK+KL+ +  + V DFL RRL+
Sbjct: 78  RRLVKIGVLDETKMKLDYVLGLKVEDFLERRLQ 110


>AF288812-1|AAG10199.1|  566|Caenorhabditis elegans synembryn
           protein.
          Length = 566

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +3

Query: 381 ISSISFIEAIMVEFDKQRYFVVQLVLGNDVP 473
           +S++   EAI++  DKQ   VV L+L ND P
Sbjct: 313 LSNMQLTEAILMHLDKQLTKVVALLL-NDAP 342


>AF098992-6|AAC67456.2|  182|Caenorhabditis elegans Hypothetical
           protein F53C3.5 protein.
          Length = 182

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 16/58 (27%), Positives = 24/58 (41%)
 Frame = +1

Query: 196 FLNFQFYWA*CR*LTTTRPFERPWC*WFATCRRPPFAFAPKGLPAVCCGGFFVFATCC 369
           + N+ +YWA     TT +PF+  +            AFA    PA+   G   +  CC
Sbjct: 41  YRNYHYYWAGHHVNTTEKPFKCNYVITDEDMELSNVAFANGTRPALITFGCAEYTYCC 98


>AC084158-34|AAK68564.1|  566|Caenorhabditis elegans Resistance to
           inhibitors of cholinesteraseprotein 8, isoform a
           protein.
          Length = 566

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +3

Query: 381 ISSISFIEAIMVEFDKQRYFVVQLVLGNDVP 473
           +S++   EAI++  DKQ   VV L+L ND P
Sbjct: 313 LSNMQLTEAILMHLDKQLTKVVALLL-NDAP 342


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,699,075
Number of Sequences: 27780
Number of extensions: 214675
Number of successful extensions: 698
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)