Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18b12
(617 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr... 29 0.54
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ... 29 0.71
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom... 28 1.2
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo... 26 3.8
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 3.8
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 26 5.0
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce... 26 5.0
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 5.0
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 26 5.0
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 26 5.0
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 26 5.0
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 6.6
SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomy... 25 6.6
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 25 6.6
>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 359
Score = 29.1 bits (62), Expect = 0.54
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = -3
Query: 351 IAKTFGASKRKNTTRSDDYESNKQPDYDMDLSDFSITEVE 232
IAK G+SKRK+ + YE++K P DL + S T+ E
Sbjct: 116 IAKFLGSSKRKSKELIEAYEASKTPP---DLKEESSTDEE 152
>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 28.7 bits (61), Expect = 0.71
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 14 EFEFILSKSSMVNLNLLNSKLDVFVLIVDRNLL 112
E + +L +N +LNS+ DV + ++D+NLL
Sbjct: 40 EAKLLLPNGMSLNETVLNSESDVVIYVLDQNLL 72
>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 703
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = -3
Query: 390 ALVNFENDNCNVRIAKTFGASKRKNTTRSDDYESNKQPDYDMDLSDFSI 244
+L NF++DNC ++ + S R N S+ S D+DL +++
Sbjct: 223 SLANFQSDNCKLKSHNSL-PSIRTNVRYSNSKPSTPLSPEDVDLGTYTV 270
>SPAC3C7.07c |||arginine-tRNA protein transferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 26.2 bits (55), Expect = 3.8
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -3
Query: 273 YDMDLSDFSITEVEATQYLTLLLIVEHAYLHYYI 172
YD D+S FS+ + A + + L L E Y +YY+
Sbjct: 185 YDPDMSKFSLGRISACREIWLAL--ECGYRYYYM 216
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 26.2 bits (55), Expect = 3.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 189 YLHYYIFKNYGVFEYCKSLTDHSLFTN 109
+L Y+ K YG+ YC L ++SL N
Sbjct: 2483 HLLVYLSKTYGLHHYCILLLENSLQNN 2509
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 25.8 bits (54), Expect = 5.0
Identities = 9/36 (25%), Positives = 20/36 (55%)
Frame = -3
Query: 483 PILFTENEGVLLCSVDRPSIVKMLSREFDTEALVNF 376
P+L T+ L +D P ++++ + +T ++NF
Sbjct: 1411 PMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNF 1446
>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 642
Score = 25.8 bits (54), Expect = 5.0
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Frame = -3
Query: 408 REFDTEALVNFENDNCNVRIAK------TFGASKRKNTTRSDDYESNKQPDYDMDLSDFS 247
R+ TE + N V++AK +F K+KNTT S ES+ D D S
Sbjct: 6 RKESTEVKKKDGSMNKRVKVAKLPKKVDSFSPKKKKNTTSSGSSESDSMSQNDKK-KDSS 64
Query: 246 ITEVE 232
+ E E
Sbjct: 65 LNESE 69
>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 25.8 bits (54), Expect = 5.0
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 344 LAIRTLQLSFSKFTKASVSNSRLSILTIDGLSTEHNSTP 460
L I+ QLSFS+ S + SRL +T+ + TP
Sbjct: 889 LIIKEEQLSFSRLQLLSRATSRLRTMTLSVFNNSGTLTP 927
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 25.8 bits (54), Expect = 5.0
Identities = 15/71 (21%), Positives = 29/71 (40%)
Frame = -3
Query: 339 FGASKRKNTTRSDDYESNKQPDYDMDLSDFSITEVEATQYLTLLLIVEHAYLHYYIFKNY 160
F S +NTT +DD+ ++ D + E + L+ +V H + ++ Y
Sbjct: 795 FKPSNHENTTSNDDHAMDEDLDDSPEEETLKDEEEIGIRLAHLIFLVGHVAIKQLVYIEY 854
Query: 159 GVFEYCKSLTD 127
E+ + D
Sbjct: 855 CEAEFKRRKAD 865
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 25.8 bits (54), Expect = 5.0
Identities = 18/90 (20%), Positives = 36/90 (40%)
Frame = -3
Query: 339 FGASKRKNTTRSDDYESNKQPDYDMDLSDFSITEVEATQYLTLLLIVEHAYLHYYIFKNY 160
FG K +D + + + D++ + ++ + + L L+ +LH +I
Sbjct: 349 FGHIDEKTIRSTDPFANRENLDFN-SIGGLEDIILQLKEMVMLPLLYPEVFLHLHITPPR 407
Query: 159 GVFEYCKSLTDHSLFTNKLRSTMSTKTSNL 70
GV + T +L L + STK +
Sbjct: 408 GVLFHGPPGTGKTLMARVLAANCSTKNQKI 437
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1811
Score = 25.8 bits (54), Expect = 5.0
Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = -3
Query: 204 IVEHAYLHYYIFKNYGVFEYCKSLTDHSLFTNKLRSTMST---KTSNLLLSKFKFTIXDX 34
I+ H++L + + Y +F CK T ++ L + + + S +L + +F+ +
Sbjct: 259 IIRHSFLLTAVRQTYNIFLLCKDSTTQAIAQVALLQMVDSVFQRLSTVLNHEREFSTINM 318
Query: 33 DKINSN 16
+K +SN
Sbjct: 319 NKSSSN 324
>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 6.6
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = +2
Query: 368 SFSKFTKASVSNSRLSILTIDGLSTEHNSTPSFSVNKMGSPGMLVSLVSVTHKLHFVSKI 547
S S +++SV + I + GLS ++ + + + +G+P +S VSVT+ VS
Sbjct: 177 SSSSSSQSSVVSVNSEIFSYFGLSQQYVNYSTSRLCVVGTPRANMSTVSVTNNGSAVSNY 236
Query: 548 ---SNXWMES 568
+N W S
Sbjct: 237 TVNTNGWTSS 246
>SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 410
Score = 25.4 bits (53), Expect = 6.6
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 528 SILLVKLVTSGWNLLCIKANV 590
S +L L+ GW ++C ANV
Sbjct: 19 SCILAWLIEEGWEVICYMANV 39
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 25.4 bits (53), Expect = 6.6
Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Frame = -3
Query: 384 VNFENDNCNVRIAKTFGASKRK------NTTRSDDYESNKQPDYDMDLSDFSITEVEATQ 223
++ E++ +V G++KRK N ++ E+N++P D+ LSD + +
Sbjct: 126 IDGEDEKKSVGQESITGSAKRKDRRSKTNGSKRQKAEANREPPSDISLSDIGGLDDCINE 185
Query: 222 YLTLLLI-VEHAYLHYY 175
L L+ + ++H ++ Y
Sbjct: 186 LLELVAMPIKHPEVYQY 202
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,372,801
Number of Sequences: 5004
Number of extensions: 46412
Number of successful extensions: 151
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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