Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18b12
         (617 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0203 - 27487469-27489787                                         28   5.2  
06_03_0099 + 16633928-16638213,16638299-16638386,16638823-166389...    28   6.8  
12_02_0792 - 23191120-23191313,23191419-23191775,23192027-231921...    27   9.0  
03_06_0566 + 34760991-34761186,34761283-34761455,34762370-347624...    27   9.0  
03_06_0489 - 34284301-34284336,34285104-34285227,34285307-342853...    27   9.0  
02_01_0618 - 4629776-4630037,4630188-4630330,4631200-4631254,463...    27   9.0  

>01_06_0203 - 27487469-27489787
          Length = 772

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -3

Query: 276 DYDMDLSDFSITEVEATQYLTLLLIVEHAYLHYYIFKNYGVFEYCKSL 133
           DYD +L  +S+   + +  +T   IVE  Y+H    KN G+ EY   L
Sbjct: 249 DYDGNLRIYSLDASDGSWTVTWQAIVEMHYVHGMCGKN-GICEYLPEL 295


>06_03_0099 +
           16633928-16638213,16638299-16638386,16638823-16638950,
           16640008-16640278
          Length = 1590

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = -3

Query: 396 TEALVNFENDNCNVRIAKTFGASKRKNTTRSDDYESNKQPDYDMDLSDFSITEVE 232
           TE   N  + + N  I+K      +K+TTR DD  +  Q    M+LS+   T  E
Sbjct: 525 TEDDANLASSSKNTMISKHHNTVDQKSTTRKDDSRNRSQK--IMELSEVRGTNTE 577


>12_02_0792 -
           23191120-23191313,23191419-23191775,23192027-23192108,
           23192186-23193097,23193190-23193346,23193540-23193694,
           23194667-23194819,23195334-23195627,23195711-23195896,
           23196062-23196662,23196868-23196992,23197101-23197197,
           23197299-23197411,23198129-23198233
          Length = 1176

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 19/60 (31%), Positives = 25/60 (41%)
 Frame = +1

Query: 319 FALRGAKRLGYPHVAVIVFKVY*SLGVKLAA*HFNDRRSVDGAQQHPLVFCKQNGFSGNA 498
           F +RG K    PH  V+ F +   L     A H N+RR V G  +  L   +      NA
Sbjct: 700 FMIRGKKNFLPPHPLVMGFGILFRLDESSLASHLNERR-VRGEDEEALPDVESQKLESNA 758


>03_06_0566 +
           34760991-34761186,34761283-34761455,34762370-34762416,
           34762546-34762640,34762734-34762816,34763331-34763399,
           34763874-34764059,34764374-34764508,34764774-34764908,
           34765148-34765218,34765393-34765470,34765626-34765767,
           34765940-34766050
          Length = 506

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 204 IVEHAYLHYYIFKNYGVFEYCKS 136
           I  H + HY++    GV+EYC+S
Sbjct: 127 IKNHKWGHYFMCGYKGVYEYCRS 149


>03_06_0489 -
           34284301-34284336,34285104-34285227,34285307-34285371,
           34285472-34285555,34285661-34285789,34285887-34285976,
           34286116-34286250,34286939-34286984,34287119-34287225,
           34287355-34287412,34287524-34287765
          Length = 371

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
 Frame = +2

Query: 350 IRTLQLSFSKFTKASV----SNSRLSILTIDG---LSTEHNSTP--SFSVNKMGSPGMLV 502
           IR  Q  F  FT+A+     +N RL     D       +H   P    SVN    PG  V
Sbjct: 293 IRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKHLRIPMAEVSVNWTEIPGSKV 352

Query: 503 SLVSVTHKLHFVSKISNXWM 562
            + S+ H +H + K+ + W+
Sbjct: 353 RMTSILHMVHVMEKVRS-WI 371


>02_01_0618 -
           4629776-4630037,4630188-4630330,4631200-4631254,
           4631539-4631603,4631714-4631857,4632141-4632194,
           4632363-4632410,4632466-4632541,4632624-4632722,
           4633000-4633097,4633615-4633719,4633816-4633924,
           4634137-4634252,4634332-4634496
          Length = 512

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 26/108 (24%), Positives = 40/108 (37%)
 Frame = -3

Query: 531 WSLWVTETNDTSIPGEPILFTENEGVLLCSVDRPSIVKMLSREFDTEALVNFENDNCNVR 352
           W+  + ET    I G      E++  +L   D  S        F+     + E + C VR
Sbjct: 83  WASHILETRIIRIDG-----VEDQYGVLIKFDTQSFTDSFYMSFNGNRFSSLEGNVCRVR 137

Query: 351 IAKTFGASKRKNTTRSDDYESNKQPDYDMDLSDFSITEVEATQYLTLL 208
             +    ++      S    S +QP    DL+   I E    QY T+L
Sbjct: 138 FVEDVHYTQLIEHAHSSVTSSAEQPTCPNDLT--KILEAFLQQYATIL 183


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,705,549
Number of Sequences: 37544
Number of extensions: 275136
Number of successful extensions: 689
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)