Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18b12
         (617 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ271740-1|CAB93524.1| 16215|Drosophila melanogaster D-Titin pro...    31   1.6  
AE014296-405|AAG22226.2| 18074|Drosophila melanogaster CG1915-PC...    31   1.6  
AY089234-1|AAL89972.1|  355|Drosophila melanogaster AT02512p pro...    29   3.8  
AL009192-1|CAA15687.1|  326|Drosophila melanogaster EG:133E12.3 ...    29   3.8  
AE014298-307|AAF45703.2|  355|Drosophila melanogaster CG4406-PA ...    29   3.8  
BT028803-1|ABI34184.1|  161|Drosophila melanogaster LP24346p pro...    28   8.8  
BT021353-1|AAX33501.1|  161|Drosophila melanogaster LP15878p pro...    28   8.8  
AY118590-1|AAM49959.1| 1858|Drosophila melanogaster LD45234p pro...    28   8.8  
AF285759-1|AAG41905.1| 1330|Drosophila melanogaster d-spinophili...    28   8.8  
AE014297-249|AAF52029.3|  306|Drosophila melanogaster CG14669-PA...    28   8.8  
AE014296-469|AAF47657.3| 2145|Drosophila melanogaster CG16757-PA...    28   8.8  
AE014134-1754|AAF52849.2| 1317|Drosophila melanogaster CG13131-P...    28   8.8  

>AJ271740-1|CAB93524.1| 16215|Drosophila melanogaster D-Titin protein.
          Length = 16215

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = -3

Query: 366   NCNVRIAKTFGASKRKNTTRSDDYESNKQPDYDMDLSDFSITEVEATQYLTLLLIVEHAY 187
             N N+R + T+    +K  T+S      ++PD+   L D+ +TE + T  L + L  E   
Sbjct: 15052 NTNLRDSGTYTCKVKKQETQSTVEVLQRKPDFIKVLEDYEVTEKD-TAILDVELTTEATE 15110

Query: 186   LHYY 175
             + +Y
Sbjct: 15111 VTWY 15114


>AE014296-405|AAG22226.2| 18074|Drosophila melanogaster CG1915-PC,
             isoform C protein.
          Length = 18074

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = -3

Query: 366   NCNVRIAKTFGASKRKNTTRSDDYESNKQPDYDMDLSDFSITEVEATQYLTLLLIVEHAY 187
             N N+R + T+    +K  T+S      ++PD+   L D+ +TE + T  L + L  E   
Sbjct: 16911 NTNLRDSGTYTCKVKKQETQSTVEVLQRKPDFIKVLEDYEVTEKD-TAILDVELTTEATE 16969

Query: 186   LHYY 175
             + +Y
Sbjct: 16970 VTWY 16973


>AY089234-1|AAL89972.1|  355|Drosophila melanogaster AT02512p
           protein.
          Length = 355

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 141 CNIQTPRNF*KYNNANRHVRRSATELDIEW 230
           CN + PR    YNNAN+H+     ++++++
Sbjct: 93  CNARNPRPGQVYNNANQHINVYGDDVEVDY 122


>AL009192-1|CAA15687.1|  326|Drosophila melanogaster EG:133E12.3
           protein.
          Length = 326

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 141 CNIQTPRNF*KYNNANRHVRRSATELDIEW 230
           CN + PR    YNNAN+H+     ++++++
Sbjct: 93  CNARNPRPGQVYNNANQHINVYGDDVEVDY 122


>AE014298-307|AAF45703.2|  355|Drosophila melanogaster CG4406-PA
           protein.
          Length = 355

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 141 CNIQTPRNF*KYNNANRHVRRSATELDIEW 230
           CN + PR    YNNAN+H+     ++++++
Sbjct: 93  CNARNPRPGQVYNNANQHINVYGDDVEVDY 122


>BT028803-1|ABI34184.1|  161|Drosophila melanogaster LP24346p
           protein.
          Length = 161

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 195 HAYLHYYIFKNYGVFEYCKSLTDHSL 118
           HAY+  Y   N   F+YC+S+ D  L
Sbjct: 31  HAYVLVYDMGNLETFQYCRSMRDQIL 56


>BT021353-1|AAX33501.1|  161|Drosophila melanogaster LP15878p
           protein.
          Length = 161

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 195 HAYLHYYIFKNYGVFEYCKSLTDHSL 118
           HAY+  Y   N   F+YC+S+ D  L
Sbjct: 31  HAYVLVYDMGNLETFQYCRSMRDQIL 56


>AY118590-1|AAM49959.1| 1858|Drosophila melanogaster LD45234p protein.
          Length = 1858

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 21/72 (29%), Positives = 32/72 (44%)
 Frame = +2

Query: 338  NVLAIRTLQLSFSKFTKASVSNSRLSILTIDGLSTEHNSTPSFSVNKMGSPGMLVSLVSV 517
            N  A+   QLS     K S SNSR S  T+D    E     S ++N  G+P    ++   
Sbjct: 1399 NGAAVDLGQLSNGNLLKRSRSNSRSSDCTLDDTDEEEEREGS-ALNLAGAPVAHETISLS 1457

Query: 518  THKLHFVSKISN 553
                H ++ ++N
Sbjct: 1458 NGNSHLLANVNN 1469


>AF285759-1|AAG41905.1| 1330|Drosophila melanogaster d-spinophilin,
            core domains protein.
          Length = 1330

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 21/72 (29%), Positives = 32/72 (44%)
 Frame = +2

Query: 338  NVLAIRTLQLSFSKFTKASVSNSRLSILTIDGLSTEHNSTPSFSVNKMGSPGMLVSLVSV 517
            N  A+   QLS     K S SNSR S  T+D    E     S ++N  G+P    ++   
Sbjct: 871  NGAAVDLGQLSNGNLLKRSRSNSRSSDCTLDDTDEEEEREGS-ALNLAGAPVAHETISLS 929

Query: 518  THKLHFVSKISN 553
                H ++ ++N
Sbjct: 930  NGNSHLLANVNN 941


>AE014297-249|AAF52029.3|  306|Drosophila melanogaster CG14669-PA
           protein.
          Length = 306

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 195 HAYLHYYIFKNYGVFEYCKSLTDHSL 118
           HAY+  Y   N   F+YC+S+ D  L
Sbjct: 176 HAYVLVYDMGNLETFQYCRSMRDQIL 201


>AE014296-469|AAF47657.3| 2145|Drosophila melanogaster CG16757-PA
            protein.
          Length = 2145

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 21/72 (29%), Positives = 32/72 (44%)
 Frame = +2

Query: 338  NVLAIRTLQLSFSKFTKASVSNSRLSILTIDGLSTEHNSTPSFSVNKMGSPGMLVSLVSV 517
            N  A+   QLS     K S SNSR S  T+D    E     S ++N  G+P    ++   
Sbjct: 1686 NGAAVDLGQLSNGNLLKRSRSNSRSSDCTLDDTDEEEEREGS-ALNLAGAPVAHETISLS 1744

Query: 518  THKLHFVSKISN 553
                H ++ ++N
Sbjct: 1745 NGNSHLLANVNN 1756


>AE014134-1754|AAF52849.2| 1317|Drosophila melanogaster CG13131-PA
           protein.
          Length = 1317

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 25/113 (22%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
 Frame = -3

Query: 435 RPSIVKMLSREFDTEALVNFENDNCNVRIA-KTFGASKRKNTT-RSDDYESNKQPDYDMD 262
           +P++ +  +RE   EAL +FE  +    I  K F + + K++    DD +  +  D +  
Sbjct: 401 KPAVTQQNNRENKPEALEDFERSSILTSIMDKVFSSQESKSSNGNCDDDKIPELEDINKP 460

Query: 261 LSDFSITEVEATQYLTLLLIVEHAYLHYYIFKNYGVFEYCKSLTDHSLFTNKL 103
           ++D  + + E+   L   +  EH+        NY   +Y K ++     +N +
Sbjct: 461 INDMFVEDPESVS-LKSNVSNEHSVFSSNKTNNYN--DYSKPVSKTLSISNSI 510


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,181,715
Number of Sequences: 53049
Number of extensions: 497665
Number of successful extensions: 1213
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1213
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2538517050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)