Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18b10
         (326 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    26   1.3  
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   2.9  
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    24   5.1  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    24   6.7  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   6.7  
SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyc...    24   6.7  
SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase |S...    23   8.8  
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    23   8.8  
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe...    23   8.8  

>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = -3

Query: 240 ENFR*VFPYLAKVSGFWTILNARVQIDKSKKNPNPASFIDTPSKSNVTFKKKMDFIKI 67
           EN + +  YLA ++   T+ +++V+    K NP   SF +  +  N    +   FIK+
Sbjct: 178 ENTKRIIQYLAAIASSTTVGSSQVEEQIIKTNPVLESFGNARTVRNNNSSRFGKFIKV 235


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 25.0 bits (52), Expect = 2.9
 Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
 Frame = -3

Query: 279 IIFRERLHHSPAQENFR*VFPYLAKVSGFWTILNARVQIDKSKKNPNPASFIDTPSKSNV 100
           I+ R+ LH+ P  EN   V   LAK S  +   N    +       +    + +P+ +  
Sbjct: 49  IVARDALHNRPVFENHGPVQVMLAKPSSNYEPGNITAAVSPPASTSSKDGVVCSPTSTGA 108

Query: 99  T--FKKKMDFIKI 67
           +   K ++D +++
Sbjct: 109 SQLLKSRVDILEV 121


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 11/45 (24%), Positives = 20/45 (44%)
 Frame = -3

Query: 273 FRERLHHSPAQENFR*VFPYLAKVSGFWTILNARVQIDKSKKNPN 139
           + + + H   + N   + P  +K     TIL  +++    KKN N
Sbjct: 454 YLDSMTHLERKVNAPFIMPIASKYKDLGTILEGKIEAGSIKKNSN 498


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +1

Query: 139 IWIFFAFIYLHSCV 180
           +WI+F F Y+ +C+
Sbjct: 289 LWIYFTFKYITTCI 302


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 156 SKKNPNPASFIDTPSKSNVTFKK 88
           +   PN + F D PS SNV+  +
Sbjct: 503 ASNQPNYSPFADNPSSSNVSIPR 525


>SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = +2

Query: 59  SKNIFIKSIFFLNVTLDFEG---VSINEAGFGFFLLLSICTLAFKIVQKPETLA 211
           +KNI +K+    + T+  +    VS ++   G FLL   C L  K  + P+  A
Sbjct: 26  NKNIPLKNWLRTSTTISKQAHVYVSEHDYSNGVFLLFRYCELFMKCQKHPDAAA 79


>SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -3

Query: 132 SFIDTPSKSNVTFKKKMDFIKI 67
           S +  P ++N+  KK+  F+K+
Sbjct: 201 SLLSRPGQNNLVLKKRFGFVKL 222


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 139 IWIFFAFIYLHSCV 180
           +W+FF F Y HS V
Sbjct: 190 LWMFFRFQYKHSIV 203


>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -3

Query: 270 RERLHHSPAQENFR*VFPYLAKVSGFWTILNARVQIDKSKKNPNPASFIDTPS 112
           R  L H  ++E  R  F Y  KVS    + +  V+  +SKK  +  SF   PS
Sbjct: 296 RFELAHLFSEEEVRHWFLYTDKVSSGPVVWSYVVENPESKKITDFFSFYSLPS 348


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,081,579
Number of Sequences: 5004
Number of extensions: 18512
Number of successful extensions: 54
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)