Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18b10
(326 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0876 - 22215688-22215789,22216051-22216206,22217227-222172... 29 0.86
07_03_1697 - 28795521-28797328,28797430-28797550 27 2.6
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 27 3.5
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 27 3.5
09_03_0192 + 13344558-13344942,13345038-13345591 27 4.6
02_01_0597 - 4433105-4433467,4433671-4433860,4434569-4434786,443... 27 4.6
11_05_0004 - 18269416-18269473,18270319-18270509,18271061-182720... 26 6.1
12_01_0803 + 7371349-7372146,7372301-7372675 26 8.0
01_06_1610 - 38625427-38625726,38625814-38625885,38626001-386261... 26 8.0
01_01_0330 - 2681019-2683988 26 8.0
>07_03_0876 -
22215688-22215789,22216051-22216206,22217227-22217247,
22217311-22217580,22217793-22219178,22220562-22220621
Length = 664
Score = 29.1 bits (62), Expect = 0.86
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = -3
Query: 243 QENFR*VFPYLAKVSGFWTILNARVQIDKSKKNPNPASFIDTPSKSNVTFKKKMDF 76
++N + F +A G T N +Q+ K + PNP +FI+ S N K F
Sbjct: 533 RDNLQQFFKAVATRDGR-TAANCTLQLSKQQSCPNPVAFIEIASFLNQELDKTFSF 587
>07_03_1697 - 28795521-28797328,28797430-28797550
Length = 642
Score = 27.5 bits (58), Expect = 2.6
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 164 ICTLAFKIVQKPETLAK*GKTHRKFSC 244
IC+ FK+VQ P A KT RK C
Sbjct: 431 ICSSCFKLVQVPADFAVSTKTVRKLRC 457
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 27.1 bits (57), Expect = 3.5
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = -3
Query: 93 KKKMDFIKIFLDNNWRNCNFKN 28
K++ +FIK+ L + R+CNFK+
Sbjct: 407 KERFEFIKVQLGSFLRSCNFKD 428
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 27.1 bits (57), Expect = 3.5
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = -3
Query: 93 KKKMDFIKIFLDNNWRNCNFKN 28
K++ +FIK+ L + R+CNFK+
Sbjct: 407 KERFEFIKVQLGSFLRSCNFKD 428
>09_03_0192 + 13344558-13344942,13345038-13345591
Length = 312
Score = 26.6 bits (56), Expect = 4.6
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Frame = -3
Query: 180 NARVQIDKS--KKNPNPASFIDTPSKSNVTFKKKMDFI-KIFLDNNWRNCNF 34
+AR+Q++K + +P I P+ +V K++ I KIF+DNN ++ +F
Sbjct: 203 SARLQLNKEGVELKEDPRMGIGKPTGKSVKKLKELAGIAKIFVDNNLKDSDF 254
>02_01_0597 - 4433105-4433467,4433671-4433860,4434569-4434786,
4434882-4436556,4437137-4438113
Length = 1140
Score = 26.6 bits (56), Expect = 4.6
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -3
Query: 162 DKSKKNPNPASFIDTPSKSNVTFKKKMDFIKIFLDNNWRNC-NFKNCINIERSE 4
DKSK+ S ++ + KK+++ + LD + NC +NC++ R E
Sbjct: 847 DKSKRLDETESKLNALVDEVNSLKKELEHTQGLLDESQMNCVQLENCLHEAREE 900
>11_05_0004 -
18269416-18269473,18270319-18270509,18271061-18272004,
18272083-18272254,18272332-18272407,18272498-18272617,
18272795-18272959,18273048-18273138,18273673-18273757,
18273873-18274043,18274151-18274207,18274290-18274385,
18275223-18275365,18275464-18275530
Length = 811
Score = 26.2 bits (55), Expect = 6.1
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -3
Query: 201 SGFWTILNARVQIDKSKKNPNPASFIDTPSKSNVTFKKK 85
S FW +NA+ Q +S N P+S+ P + + K+
Sbjct: 521 SNFWHTVNAQYQDQQSNHNMFPSSWSFMPPNTRLGLNKQ 559
>12_01_0803 + 7371349-7372146,7372301-7372675
Length = 390
Score = 25.8 bits (54), Expect = 8.0
Identities = 14/58 (24%), Positives = 29/58 (50%)
Frame = -3
Query: 264 RLHHSPAQENFR*VFPYLAKVSGFWTILNARVQIDKSKKNPNPASFIDTPSKSNVTFK 91
++ +SP N + V K++ + ++I+ ++K P P +TP+K+ V K
Sbjct: 206 KIKYSPNARNIKEVEVQPWKMNNLIAFMKKSLEIEPTRKRPRPR---ETPTKTGVQAK 260
>01_06_1610 -
38625427-38625726,38625814-38625885,38626001-38626117,
38626509-38626674,38626768-38626815,38626889-38626962,
38627126-38627243,38627332-38627420,38627512-38627687,
38627785-38627898,38627981-38628051,38628431-38628477,
38628581-38628721,38629095-38629136
Length = 524
Score = 25.8 bits (54), Expect = 8.0
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 167 CTLAFKIVQKPETLAK*GKTHRKFSCAG 250
CTLA K +PET AK +T SC+G
Sbjct: 409 CTLASKDSNEPETFAKENET--STSCSG 434
>01_01_0330 - 2681019-2683988
Length = 989
Score = 25.8 bits (54), Expect = 8.0
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +2
Query: 56 LSKNIFIKSIFFLNVTLDFEGVSINEAGFGFFLLLSICTLAFKIVQK-PETLAK 214
++K+IF + + L + I G FLLL + L++ +QK PE++ K
Sbjct: 548 INKDIFRELKHIRVLVLSGTSIQIIPESVGNFLLLRLLDLSYTKIQKLPESIGK 601
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,235,802
Number of Sequences: 37544
Number of extensions: 93640
Number of successful extensions: 185
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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