Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18b10
         (326 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical pr...    29   1.0  
Z77664-2|CAB01217.1|  643|Caenorhabditis elegans Hypothetical pr...    27   2.4  
Z73970-5|CAA98248.1|  643|Caenorhabditis elegans Hypothetical pr...    27   2.4  
AL032636-1|CAA21605.1|  343|Caenorhabditis elegans Hypothetical ...    26   5.6  
Z93386-2|CAB07647.1|  387|Caenorhabditis elegans Hypothetical pr...    26   7.4  
Z81570-1|CAB04606.1|  749|Caenorhabditis elegans Hypothetical pr...    25   9.7  
AY887910-1|AAX34422.1|  749|Caenorhabditis elegans anion transpo...    25   9.7  

>U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical
           protein ZK418.6 protein.
          Length = 825

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 20/71 (28%), Positives = 32/71 (45%)
 Frame = -3

Query: 261 LHHSPAQENFR*VFPYLAKVSGFWTILNARVQIDKSKKNPNPASFIDTPSKSNVTFKKKM 82
           +HH   QE+ + + P      G W+  N+ + I        P  +   PS SNV   +KM
Sbjct: 731 VHHVIKQESMKDIPPGSPASPGAWSGSNSSL-IFMPSSTQAPEHYA-IPSVSNVLMFRKM 788

Query: 81  DFIKIFLDNNW 49
           + I    ++NW
Sbjct: 789 EHIFYSSESNW 799


>Z77664-2|CAB01217.1|  643|Caenorhabditis elegans Hypothetical
           protein C29A12.6 protein.
          Length = 643

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 150 KNPNPASFIDTPSKSNVTFKKKMDFI 73
           ++P P S ID+P K  V   K MDF+
Sbjct: 392 RSPAPVSTIDSPLKPEVPVIKPMDFM 417


>Z73970-5|CAA98248.1|  643|Caenorhabditis elegans Hypothetical
           protein C29A12.6 protein.
          Length = 643

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 150 KNPNPASFIDTPSKSNVTFKKKMDFI 73
           ++P P S ID+P K  V   K MDF+
Sbjct: 392 RSPAPVSTIDSPLKPEVPVIKPMDFM 417


>AL032636-1|CAA21605.1|  343|Caenorhabditis elegans Hypothetical
           protein Y40B1B.3 protein.
          Length = 343

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 29  FLKLQLRQLLSKNIFI-KSIFFLNVTLDFEGVSINEAGFGFFLLL 160
           F K ++ QL  +N++I   +  +  TLDFE +      F +FL+L
Sbjct: 128 FHKPKISQLYHENVYICDQMLEIIKTLDFEKIEFWIRTFDYFLIL 172


>Z93386-2|CAB07647.1|  387|Caenorhabditis elegans Hypothetical
           protein R11H6.3 protein.
          Length = 387

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -3

Query: 192 WTILNARVQIDKSKKNPNPASFIDTPSKS 106
           WT+L + + +D+ +  P   SF+++PS S
Sbjct: 282 WTVLVSSI-VDRLRAAPRRGSFLNSPSSS 309


>Z81570-1|CAB04606.1|  749|Caenorhabditis elegans Hypothetical
           protein K12G11.1 protein.
          Length = 749

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -3

Query: 162 DKSKKNPNPASFIDTPSKSNVTFKKKMDFIKIFLDN 55
           +KS+ N    SF+   + +   F +K D+ K  L+N
Sbjct: 29  NKSEPNKRRVSFVQRGAMNQAQFDEKFDYNKPHLEN 64


>AY887910-1|AAX34422.1|  749|Caenorhabditis elegans anion
           transporter SULP-4 protein.
          Length = 749

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -3

Query: 162 DKSKKNPNPASFIDTPSKSNVTFKKKMDFIKIFLDN 55
           +KS+ N    SF+   + +   F +K D+ K  L+N
Sbjct: 29  NKSEPNKRRVSFVQRGAMNQAQFDEKFDYNKPHLEN 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,932,285
Number of Sequences: 27780
Number of extensions: 101874
Number of successful extensions: 291
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 398409266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)