Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18b10
         (326 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       25   0.31 
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   3.8  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    20   6.6  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    20   6.6  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 24.6 bits (51), Expect = 0.31
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 102 VTFKKKMDFIKIFLDNN 52
           V  KKK DFI +FL  N
Sbjct: 458 VEMKKKADFIAVFLSEN 474


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.0 bits (42), Expect = 3.8
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +2

Query: 101 TLDFEGVSINEAGFGFFLLLSIC--TLAFKIVQK 196
           T+ FEG     +G  FFL +  C   +  K++Q+
Sbjct: 344 TIMFEGHDTTASGSSFFLAVMGCHPDIQEKVIQE 377


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +2

Query: 146 FFLLLSICT 172
           FFLLLS CT
Sbjct: 9   FFLLLSSCT 17


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +2

Query: 146 FFLLLSICT 172
           FFLLLS CT
Sbjct: 9   FFLLLSSCT 17


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,608
Number of Sequences: 438
Number of extensions: 1230
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7217694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)