Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18b09
(460 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P46776 Cluster: 60S ribosomal protein L27a; n=204; Euka... 146 3e-34
UniRef50_A1BQ56 Cluster: Ribosomal protein L27a; n=4; Bilateria|... 135 4e-31
UniRef50_Q00454 Cluster: 60S ribosomal protein L27a; n=3; Eukary... 128 6e-29
UniRef50_Q9LR33 Cluster: 60S ribosomal protein L27a-2; n=56; Euk... 116 3e-25
UniRef50_Q00V89 Cluster: 60s ribosomal protein L15/L27; n=2; Ost... 115 4e-25
UniRef50_O62581 Cluster: 60S ribosomal protein L27a; n=1; Enceph... 71 9e-12
UniRef50_Q9AW02 Cluster: 60S ribosomal protein L27A; n=3; Eukary... 69 4e-11
UniRef50_Q4P992 Cluster: Putative uncharacterized protein; n=1; ... 67 1e-10
UniRef50_A7QSF4 Cluster: Chromosome chr12 scaffold_159, whole ge... 57 2e-07
UniRef50_Q3LW97 Cluster: Ribosomal protein L27a; n=1; Bigelowiel... 51 1e-05
UniRef50_Q9LPV3 Cluster: Putative 60S ribosomal protein L27a-1; ... 46 3e-04
UniRef50_P53143 Cluster: Putative uncharacterized protein YGL102... 45 7e-04
UniRef50_UPI0000DA3FAD Cluster: PREDICTED: similar to 60S riboso... 39 0.060
UniRef50_Q6LXD1 Cluster: 50S ribosomal protein L15P; n=9; Euryar... 35 0.97
UniRef50_Q9ZQM0 Cluster: Putative non-LTR retroelement reverse t... 33 3.0
UniRef50_UPI0000F1F127 Cluster: PREDICTED: hypothetical protein;... 32 5.2
UniRef50_A0RUE5 Cluster: Ribosomal protein L15; n=1; Cenarchaeum... 32 5.2
UniRef50_A4ANL3 Cluster: Putative lipoprotein; n=1; Flavobacteri... 32 6.8
UniRef50_Q60KI9 Cluster: Putative uncharacterized protein CBG240... 32 6.8
UniRef50_A7RPS0 Cluster: Predicted protein; n=1; Nematostella ve... 32 6.8
>UniRef50_P46776 Cluster: 60S ribosomal protein L27a; n=204;
Eukaryota|Rep: 60S ribosomal protein L27a - Homo sapiens
(Human)
Length = 148
Score = 146 bits (353), Expect = 3e-34
Identities = 71/143 (49%), Positives = 88/143 (61%)
Frame = -2
Query: 429 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXGNAGGEHHHRINMDKYHPGYFGKLGMRN 250
M + +KTRKLRGHVS GNAGG HHHRIN DKYHPGYFGK+GM++
Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60
Query: 249 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXLPKQ 70
+H ++N++FCP +NLDKLWTLVSEQTR+ A G P+I++V++ LPKQ
Sbjct: 61 YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQ 120
Query: 69 PVIVXXXXXXXXXXXXXKDVGGA 1
PVIV K VGGA
Sbjct: 121 PVIVKAKFFSRRAEEKIKSVGGA 143
>UniRef50_A1BQ56 Cluster: Ribosomal protein L27a; n=4;
Bilateria|Rep: Ribosomal protein L27a - Ascaris suum
(Pig roundworm) (Ascaris lumbricoides)
Length = 133
Score = 135 bits (327), Expect = 4e-31
Identities = 66/110 (60%), Positives = 74/110 (67%)
Frame = -2
Query: 330 NAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASA 151
NAGG+HHHRIN DKYHPGYFGK+GMRNFH RKN +CP +NLDKLW+LVSE+TR YA
Sbjct: 20 NAGGQHHHRINFDKYHPGYFGKVGMRNFHVRKNGLYCPTVNLDKLWSLVSEKTRTTYAEK 79
Query: 150 PDGKVPVINIVKAXXXXXXXXXXLPKQPVIVXXXXXXXXXXXXXKDVGGA 1
D K PVI++VKA LPKQPVIV K VGGA
Sbjct: 80 KD-KAPVIDVVKAGYFKVLGKGLLPKQPVIVKAKFFSRTAEQKIKGVGGA 128
>UniRef50_Q00454 Cluster: 60S ribosomal protein L27a; n=3;
Eukaryota|Rep: 60S ribosomal protein L27a - Tetrahymena
thermophila
Length = 149
Score = 128 bits (309), Expect = 6e-29
Identities = 70/145 (48%), Positives = 82/145 (56%), Gaps = 2/145 (1%)
Frame = -2
Query: 429 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXGN--AGGEHHHRINMDKYHPGYFGKLGM 256
M + KKTRKLRGHVS G AGG HHHRI M+K+HPGY+GKLGM
Sbjct: 1 MVSHLKKTRKLRGHVSHGHGRVGKHRKGGCRGGRGKAGGMHHHRILMEKWHPGYYGKLGM 60
Query: 255 RNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXLP 76
R FH +KN CPV+N+DKLW+LVS+ TR KYA KVPVI++ KA LP
Sbjct: 61 RTFHLKKNPLHCPVVNIDKLWSLVSDATRQKYAE-DKKKVPVIDVTKAGFFKVLGKGRLP 119
Query: 75 KQPVIVXXXXXXXXXXXXXKDVGGA 1
QPV+V VGGA
Sbjct: 120 NQPVVVKAKYFSKTAERRIVAVGGA 144
>UniRef50_Q9LR33 Cluster: 60S ribosomal protein L27a-2; n=56;
Eukaryota|Rep: 60S ribosomal protein L27a-2 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 146
Score = 116 bits (278), Expect = 3e-25
Identities = 65/144 (45%), Positives = 81/144 (56%), Gaps = 1/144 (0%)
Frame = -2
Query: 429 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXGNAGGEHHHRINMDKYHPGYFGKLGMRN 250
MAT+ KK RK RGHVS GNAGG HHHRI DKYHPGYFGK+GMR
Sbjct: 1 MATALKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
Query: 249 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXLPK- 73
FH +NK FCP++NLDKLW+LV E + K S+ D VP+I++ + LP+
Sbjct: 61 FHKLRNKFFCPIVNLDKLWSLVPEDVKAK--SSKD-NVPLIDVTQHGFFKVLGKGHLPEN 117
Query: 72 QPVIVXXXXXXXXXXXXXKDVGGA 1
+P +V K+ GGA
Sbjct: 118 KPFVVKAKLISKTAEKKIKEAGGA 141
>UniRef50_Q00V89 Cluster: 60s ribosomal protein L15/L27; n=2;
Ostreococcus|Rep: 60s ribosomal protein L15/L27 -
Ostreococcus tauri
Length = 198
Score = 115 bits (277), Expect = 4e-25
Identities = 62/141 (43%), Positives = 75/141 (53%)
Frame = -2
Query: 423 TSKKKTRKLRGHVSXXXXXXXXXXXXXXXXGNAGGEHHHRINMDKYHPGYFGKLGMRNFH 244
T K RK RGHVS G AGG+HHHRI MDKYHPGYFGK+GMR+FH
Sbjct: 54 TQLHKNRKKRGHVSAGHGRIGKHRKHPAGRGMAGGQHHHRIMMDKYHPGYFGKVGMRHFH 113
Query: 243 FRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXLPKQPV 64
KN+ CP +N+DKLWTLV + R + A + PVI++ LP QPV
Sbjct: 114 KLKNQTVCPTINIDKLWTLVGTEKREECAK-NTSQAPVIDLTDHGIFKLLGKGQLPNQPV 172
Query: 63 IVXXXXXXXXXXXXXKDVGGA 1
+V K+VGGA
Sbjct: 173 VVKCRYISKLAEKKIKEVGGA 193
>UniRef50_O62581 Cluster: 60S ribosomal protein L27a; n=1;
Encephalitozoon cuniculi|Rep: 60S ribosomal protein L27a
- Encephalitozoon cuniculi
Length = 147
Score = 71.3 bits (167), Expect = 9e-12
Identities = 41/142 (28%), Positives = 65/142 (45%)
Frame = -2
Query: 429 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXGNAGGEHHHRINMDKYHPGYFGKLGMRN 250
M KKTRKLRGHVS G AGG H + ++HP Y GK GMR
Sbjct: 1 MTDRVKKTRKLRGHVSHGYGRVGKHRKHSGGRGLAGGFSHMKTFFTRFHPDYHGKRGMRV 60
Query: 249 FHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXLPKQ 70
+H ++N ++ ++ +LW ++ ++ R + P+ KVPVI++ + ++
Sbjct: 61 YHRKENSDYARPISSARLWGMIPKEQRYDFLDNPE-KVPVIDVREFGYHVVVGGKLSLER 119
Query: 69 PVIVXXXXXXXXXXXXXKDVGG 4
P++V VGG
Sbjct: 120 PIVVKARYFTPSAKEEITKVGG 141
>UniRef50_Q9AW02 Cluster: 60S ribosomal protein L27A; n=3;
Eukaryota|Rep: 60S ribosomal protein L27A - Guillardia
theta (Cryptomonas phi)
Length = 144
Score = 69.3 bits (162), Expect = 4e-11
Identities = 33/78 (42%), Positives = 44/78 (56%)
Frame = -2
Query: 429 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXGNAGGEHHHRINMDKYHPGYFGKLGMRN 250
M T +++RK RGHVS GN+GG+HHH+I +KYH +FGK GMR
Sbjct: 1 MPTDIRRSRKKRGHVSSGHGRVGKHRKHPGGRGNSGGQHHHKIFFEKYHKKHFGKTGMRY 60
Query: 249 FHFRKNKNFCPVLNLDKL 196
+ K NF +NLDK+
Sbjct: 61 YRKLKQNNFNKSINLDKI 78
>UniRef50_Q4P992 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 187
Score = 67.3 bits (157), Expect = 1e-10
Identities = 36/88 (40%), Positives = 49/88 (55%)
Frame = -2
Query: 321 GEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASAPDG 142
G ++ + YFGK+GMR+FH +N +F PV+NLDKLWTLV + R K +A
Sbjct: 77 GSQEMEVDREIGRDSYFGKVGMRHFHLTRNSSFRPVVNLDKLWTLVPAEQR-KGLTADST 135
Query: 141 KVPVINIVKAXXXXXXXXXXLPKQPVIV 58
+VPVI+ + A LP P IV
Sbjct: 136 EVPVIDTLAAGYGKVLGKGRLPALPCIV 163
Score = 52.4 bits (120), Expect = 5e-06
Identities = 26/50 (52%), Positives = 27/50 (54%)
Frame = -2
Query: 429 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXGNAGGEHHHRINMDKYHP 280
M T KTRK RGHVS G AGG+HHHR NMDKYHP
Sbjct: 1 MPTHLSKTRKHRGHVSAGNGRVGKHRKHPGGRGLAGGQHHHRTNMDKYHP 50
>UniRef50_A7QSF4 Cluster: Chromosome chr12 scaffold_159, whole
genome shotgun sequence; n=3; Vitis vinifera|Rep:
Chromosome chr12 scaffold_159, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 151
Score = 57.2 bits (132), Expect = 2e-07
Identities = 21/37 (56%), Positives = 31/37 (83%)
Frame = -2
Query: 294 DKYHPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWTLV 184
DK+HPG FGK+GMR+FH + K CP++++DKLW++V
Sbjct: 28 DKHHPGNFGKVGMRHFHKLRIKLHCPIVHIDKLWSMV 64
>UniRef50_Q3LW97 Cluster: Ribosomal protein L27a; n=1; Bigelowiella
natans|Rep: Ribosomal protein L27a - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 151
Score = 50.8 bits (116), Expect = 1e-05
Identities = 25/68 (36%), Positives = 34/68 (50%)
Frame = -2
Query: 429 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXGNAGGEHHHRINMDKYHPGYFGKLGMRN 250
M T KK+RK+RG S G +GG+HHH+I ++Y YF K GMR
Sbjct: 1 MVTKLKKSRKMRGKNSSGHGRINKHRKNPGGKGKSGGQHHHKIIFERYRETYFRKTGMRI 60
Query: 249 FHFRKNKN 226
++ K N
Sbjct: 61 YNLEKTLN 68
>UniRef50_Q9LPV3 Cluster: Putative 60S ribosomal protein L27a-1;
n=1; Arabidopsis thaliana|Rep: Putative 60S ribosomal
protein L27a-1 - Arabidopsis thaliana (Mouse-ear cress)
Length = 104
Score = 46.4 bits (105), Expect = 3e-04
Identities = 32/84 (38%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Frame = -2
Query: 429 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXGNAGGEHHHRINMDKYHPGYFGK--LGM 256
M TS+KKTR LR HVS H R + PG G +GM
Sbjct: 1 MTTSRKKTRNLREHVSVG---------------------HGRFGKHRKLPGSRGNAGVGM 39
Query: 255 RNFHFRKNKNFCPVLNLDKLWTLV 184
R FH +NK +C ++NLDKLW++V
Sbjct: 40 RYFHKLRNKFYCQIVNLDKLWSMV 63
>UniRef50_P53143 Cluster: Putative uncharacterized protein YGL102C;
n=2; Saccharomycetaceae|Rep: Putative uncharacterized
protein YGL102C - Saccharomyces cerevisiae (Baker's
yeast)
Length = 142
Score = 45.2 bits (102), Expect = 7e-04
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Frame = +1
Query: 100 LVVSSFDNIDDGDLAIWSRC-ILQPRLFRD*CPKLI*VQNWTEILVLSKVEISHTKFAKV 276
L V+ ++++ + SR +L +F D CP+ + VQ+W + L VE+SHT ++
Sbjct: 42 LTVTGCQSVNNWSSFLRSRFQVLVSLVFWDQCPQFVQVQDWLPEMSLLLVEVSHTNLTEI 101
Query: 277 SRMVLVHVDXXXXXXXXXXXXXXXXXXLSDTTMS 378
+ MV +HV+ L+DTT +
Sbjct: 102 TWMVFIHVNSVVMLTTGHTSTTGVLSVLTDTTFT 135
>UniRef50_UPI0000DA3FAD Cluster: PREDICTED: similar to 60S ribosomal
protein L27a; n=1; Rattus norvegicus|Rep: PREDICTED:
similar to 60S ribosomal protein L27a - Rattus
norvegicus
Length = 86
Score = 38.7 bits (86), Expect = 0.060
Identities = 21/51 (41%), Positives = 24/51 (47%)
Frame = -2
Query: 429 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXGNAGGEHHHRINMDKYHPG 277
M+ +KTRK +GHVS NAGGEH HRIN PG
Sbjct: 1 MSGRLRKTRKFQGHVSDSHSRISKHHKHRGGQRNAGGEHLHRINCYYKVPG 51
>UniRef50_Q6LXD1 Cluster: 50S ribosomal protein L15P; n=9;
Euryarchaeota|Rep: 50S ribosomal protein L15P -
Methanococcus maripaludis
Length = 143
Score = 34.7 bits (76), Expect = 0.97
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Frame = -2
Query: 330 NAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWTLVSEQTRLKYASA 151
NAG + H +++ K++P YFGK G N+N C + L+ + E+ LKY A
Sbjct: 36 NAGHQKHKWLSVCKFNPDYFGKYGF-------NRNPCLIKQLETINIGELEEYILKYKDA 88
Query: 150 ---PDGKVPV 130
+GKV V
Sbjct: 89 FQVEEGKVVV 98
>UniRef50_Q9ZQM0 Cluster: Putative non-LTR retroelement reverse
transcriptase; n=1; Arabidopsis thaliana|Rep: Putative
non-LTR retroelement reverse transcriptase - Arabidopsis
thaliana (Mouse-ear cress)
Length = 1044
Score = 33.1 bits (72), Expect = 3.0
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -1
Query: 295 GQVPSWILWQTWYEKFPL*KEQEFLSSFEL 206
GQ+P WILW W + L EQ+ +SS +L
Sbjct: 842 GQLPIWILWNLWNCRNKLIFEQKHISSMDL 871
>UniRef50_UPI0000F1F127 Cluster: PREDICTED: hypothetical protein;
n=7; Danio rerio|Rep: PREDICTED: hypothetical protein -
Danio rerio
Length = 656
Score = 32.3 bits (70), Expect = 5.2
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -2
Query: 228 NFCPVLNLDKLWTLVSEQTRLKYASAPDGKV 136
NFCP L D WT++S+ + Y S+PD V
Sbjct: 116 NFCPWLEED--WTMLSDDSTTPYESSPDNSV 144
>UniRef50_A0RUE5 Cluster: Ribosomal protein L15; n=1; Cenarchaeum
symbiosum|Rep: Ribosomal protein L15 - Cenarchaeum
symbiosum
Length = 138
Score = 32.3 bits (70), Expect = 5.2
Identities = 25/82 (30%), Positives = 31/82 (37%), Gaps = 2/82 (2%)
Frame = -2
Query: 429 MATSKKKTRKLRG-HVSXXXXXXXXXXXXXXXXGNAGGE-HHHRINMDKYHPGYFGKLGM 256
MAT +KTRKLRG G+ HH +M K PG+FG
Sbjct: 1 MATRNRKTRKLRGSRTHGWGQVGQHRASGHKGGVGVSGQLKHHFSSMLKEDPGHFGHDST 60
Query: 255 RNFHFRKNKNFCPVLNLDKLWT 190
H K + V +LD T
Sbjct: 61 HPPHSNAAKKWASVRDLDDFHT 82
>UniRef50_A4ANL3 Cluster: Putative lipoprotein; n=1;
Flavobacteriales bacterium HTCC2170|Rep: Putative
lipoprotein - Flavobacteriales bacterium HTCC2170
Length = 535
Score = 31.9 bits (69), Expect = 6.8
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +2
Query: 2 APPTSLIFFSADFEKNFAFTMTGCLGSLPL 91
A SL FFS D + N A T GCLG+ P+
Sbjct: 308 AEGNSLYFFSLDTKDNSACTSAGCLGAWPV 337
>UniRef50_Q60KI9 Cluster: Putative uncharacterized protein CBG24039;
n=1; Caenorhabditis briggsae|Rep: Putative
uncharacterized protein CBG24039 - Caenorhabditis
briggsae
Length = 991
Score = 31.9 bits (69), Expect = 6.8
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = -2
Query: 306 RINMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNLD-KLWTLVSEQ 175
++ D+Y Y G L + FHF K C + +LD K WT++++Q
Sbjct: 894 KVLADRYKQ-YNGMLKEKKFHFDKLFEICKLTDLDKKQWTILNDQ 937
>UniRef50_A7RPS0 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 306
Score = 31.9 bits (69), Expect = 6.8
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +3
Query: 222 RNSCSF*SGNFSYQVCQSIQDGTCPC*FCDGAHHQHYHDLLDAYGA 359
R+SC + F +C+S T PC D H +H DL+D GA
Sbjct: 108 RSSCQ--ARCFMNNLCRSYNYNTTPCQLSDSDHLEHPSDLVDKPGA 151
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 437,978,876
Number of Sequences: 1657284
Number of extensions: 8179045
Number of successful extensions: 19185
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 18579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19167
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 24351434270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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