Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18b03
         (806 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    29   1.0  
SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual    27   3.1  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    25   9.6  
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    25   9.6  

>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 20/71 (28%), Positives = 31/71 (43%)
 Frame = -2

Query: 598 PTV*LCCVCNVQYLYR*ILPTTARYCFRRFLYGLTQ*RNRAGVSNCAVWDSCAISILLTS 419
           PTV    + N  Y+    L     Y + +  Y + Q   + G+SN     SC  +   TS
Sbjct: 243 PTVPQAVIYNSPYIIT--LHNQYIYIWNKETYAMIQ---QIGISNIYSTFSCHKNTFFTS 297

Query: 418 NVYLWLVLAAD 386
           N Y+W++   D
Sbjct: 298 NSYVWILTPED 308


>SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 268

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 248 DMLLLRDEAVEDASPSGTAVLPNPGNP 168
           D +++     E+ +PS TA LP+P NP
Sbjct: 60  DGIMVGSRTAENDNPSLTAKLPDPANP 86


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 609  PAESASNHTAQKINGK*STVVPTSTSKMGSKAPSCPPHL 725
            P  SA NH ++K+N      +P +  K+ S  P   P L
Sbjct: 931  PRTSAGNHLSEKLNS--DNHIPKALQKLDSADPIRKPSL 967


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
 Frame = +3

Query: 687 KMGSKAPSCPPHLKNG-----K*STEVPTSTSKMGSKAPKCPPRP 806
           K G+  P  P H   G     + S+ VPT  +   S++   PPRP
Sbjct: 471 KEGTSFPGLPYHSSKGNLYAPQPSSNVPTKFTGGASESSSVPPRP 515


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,411,079
Number of Sequences: 5004
Number of extensions: 71485
Number of successful extensions: 178
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)