Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18b03
         (806 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0274 - 2901033-2901778,2902475-2902634                           39   0.004
08_01_1059 - 10775143-10776063                                         37   0.016
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121...    28   7.6  
04_02_0008 + 8473198-8475523,8475618-8475967                           28   7.6  

>10_01_0274 - 2901033-2901778,2902475-2902634
          Length = 301

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 4/88 (4%)
 Frame = +3

Query: 549 HRYRY*TLQTQHS*TVGTQNPAESASNHTAQKINGK*STVVPTSTSKMGSKAPSCPPHL- 725
           HR      Q   S   GT  P  S S  +     G+ +   P +    G  AP CPP   
Sbjct: 165 HRKPMPEYQPPPSPVYGTPAPGCSCSPPSTPPGYGQPAPECPPADPGYGQPAPECPPPPT 224

Query: 726 ---KNGK*STEVPTSTSKMGSKAPKCPP 800
              + G+ + E P ST   G+ AP+CPP
Sbjct: 225 PAPECGQPAPEYPPSTPAYGTPAPECPP 252



 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/49 (34%), Positives = 21/49 (42%)
 Frame = +3

Query: 660 STVVPTSTSKMGSKAPSCPPHLKNGK*STEVPTSTSKMGSKAPKCPPRP 806
           S V  T         PS PP    G+ + E P +    G  AP+CPP P
Sbjct: 177 SPVYGTPAPGCSCSPPSTPPGY--GQPAPECPPADPGYGQPAPECPPPP 223


>08_01_1059 - 10775143-10776063
          Length = 306

 Score = 37.1 bits (82), Expect = 0.016
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +1

Query: 49  NYTSPKHVSTRT--AHTNATHKKEAKAQRGIVFIVLALALGRGLPGFGNTAVP 201
           NY   K  +++    H NA  ++ + A+RG      A A GRGL GFG+  VP
Sbjct: 110 NYCQRKFYTSQALGGHQNAHKRERSLAKRGAAVAAAAAAAGRGLYGFGDPFVP 162


>10_01_0100 +
           1209424-1209538,1210373-1211073,1211158-1211379,
           1211452-1211878,1212091-1213219,1213623-1213746,
           1214207-1214278,1215480-1215578,1215617-1215640,
           1215704-1215745,1215815-1215895,1215983-1216114,
           1216115-1216196,1216271-1216365,1218499-1218570,
           1218676-1218792,1219379-1219447,1219521-1219587,
           1219886-1220025
          Length = 1269

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +3

Query: 666 VVPTSTSKMGSKAPSCPPHLKNGK*STEVPT--STSKMGSKAPKCPPRP 806
           V P     +G+K P+ PP     + S+  PT  +TS  G   P  PP P
Sbjct: 650 VPPPPAPGIGNKFPAPPPPPPPPRSSSRTPTGAATSSKGPPPPPPPPLP 698


>04_02_0008 + 8473198-8475523,8475618-8475967
          Length = 891

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +2

Query: 677 LNLKNGK*STVVPTSPQKWEVKHRSAHLNLKNGK*SXEVPTS 802
           L+L N K S ++P   Q+    H   HLN  N + S ++P+S
Sbjct: 409 LDLSNNKLSGLIP---QQVGTLHNLGHLNFSNNQLSGQIPSS 447


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,843,987
Number of Sequences: 37544
Number of extensions: 505884
Number of successful extensions: 1436
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1425
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)