Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18b03
(806 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z97184-7|CAB09994.2| 610|Homo sapiens chromosome 6 open reading... 32 2.8
BX000343-2|CAI41830.1| 610|Homo sapiens WD repeat domain 46 pro... 32 2.8
BC000388-1|AAH00388.1| 610|Homo sapiens WD repeat domain 46 pro... 32 2.8
AL844527-3|CAI41833.1| 610|Homo sapiens WD repeat domain 46 pro... 32 2.8
AL662827-3|CAI17516.1| 610|Homo sapiens WD repeat domain 46 pro... 32 2.8
AL662820-3|CAI18113.1| 610|Homo sapiens WD repeat domain 46 pro... 32 2.8
AL031228-6|CAA20229.1| 610|Homo sapiens chromosome 6 open readi... 32 2.8
BC015152-1|AAH15152.2| 537|Homo sapiens zinc finger protein 775... 31 3.7
AK027069-1|BAB15646.1| 171|Homo sapiens protein ( Homo sapiens ... 31 3.7
DQ356012-1|ABC86955.1| 818|Homo sapiens ZNF438 transcript varia... 31 4.9
DQ356011-1|ABC86954.1| 818|Homo sapiens ZNF438 transcript varia... 31 4.9
BC104757-1|AAI04758.1| 828|Homo sapiens zinc finger protein 438... 31 4.9
BC101622-1|AAI01623.1| 828|Homo sapiens ZNF438 transcript varia... 31 4.9
AL359532-3|CAM17193.1| 828|Homo sapiens zinc finger protein 438... 31 4.9
AL359532-2|CAI13438.1| 818|Homo sapiens zinc finger protein 438... 31 4.9
AL359532-1|CAI13437.1| 392|Homo sapiens zinc finger protein 438... 31 4.9
AK131357-1|BAD18510.1| 779|Homo sapiens protein ( Homo sapiens ... 31 4.9
AF440405-1|AAP97319.1| 392|Homo sapiens unknown protein. 31 4.9
AF428258-1|AAP97298.1| 828|Homo sapiens hypothetical protein pr... 31 4.9
>Z97184-7|CAB09994.2| 610|Homo sapiens chromosome 6 open reading
frame 11 protein.
Length = 610
Score = 31.9 bits (69), Expect = 2.8
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 601 RKIRPN-PHLTILLKK*TGSKAPSCPPQPQKWEVKHRRAHLTSKMGSKAPKCPPQPQKWE 777
R++RP P +LKK SK P P +P++W+ + L+ G++ P P P E
Sbjct: 51 RELRPQRPKNAYILKKSRISKKPQVPKKPREWKNPESQRGLS---GAQDPFPGPAPVPVE 107
Query: 778 VKXRSAHLD 804
V + +D
Sbjct: 108 VVQKFCRID 116
>BX000343-2|CAI41830.1| 610|Homo sapiens WD repeat domain 46
protein.
Length = 610
Score = 31.9 bits (69), Expect = 2.8
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 601 RKIRPN-PHLTILLKK*TGSKAPSCPPQPQKWEVKHRRAHLTSKMGSKAPKCPPQPQKWE 777
R++RP P +LKK SK P P +P++W+ + L+ G++ P P P E
Sbjct: 51 RELRPQRPKNAYILKKSRISKKPQVPKKPREWKNPESQRGLS---GAQDPFPGPAPVPVE 107
Query: 778 VKXRSAHLD 804
V + +D
Sbjct: 108 VVQKFCRID 116
>BC000388-1|AAH00388.1| 610|Homo sapiens WD repeat domain 46
protein.
Length = 610
Score = 31.9 bits (69), Expect = 2.8
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 601 RKIRPN-PHLTILLKK*TGSKAPSCPPQPQKWEVKHRRAHLTSKMGSKAPKCPPQPQKWE 777
R++RP P +LKK SK P P +P++W+ + L+ G++ P P P E
Sbjct: 51 RELRPQRPKNAYILKKSRISKKPQVPKKPREWKNPESQRGLS---GAQDPFPGPAPVPVE 107
Query: 778 VKXRSAHLD 804
V + +D
Sbjct: 108 VVQKFCRID 116
>AL844527-3|CAI41833.1| 610|Homo sapiens WD repeat domain 46
protein.
Length = 610
Score = 31.9 bits (69), Expect = 2.8
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 601 RKIRPN-PHLTILLKK*TGSKAPSCPPQPQKWEVKHRRAHLTSKMGSKAPKCPPQPQKWE 777
R++RP P +LKK SK P P +P++W+ + L+ G++ P P P E
Sbjct: 51 RELRPQRPKNAYILKKSRISKKPQVPKKPREWKNPESQRGLS---GAQDPFPGPAPVPVE 107
Query: 778 VKXRSAHLD 804
V + +D
Sbjct: 108 VVQKFCRID 116
>AL662827-3|CAI17516.1| 610|Homo sapiens WD repeat domain 46
protein.
Length = 610
Score = 31.9 bits (69), Expect = 2.8
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 601 RKIRPN-PHLTILLKK*TGSKAPSCPPQPQKWEVKHRRAHLTSKMGSKAPKCPPQPQKWE 777
R++RP P +LKK SK P P +P++W+ + L+ G++ P P P E
Sbjct: 51 RELRPQRPKNAYILKKSRISKKPQVPKKPREWKNPESQRGLS---GAQDPFPGPAPVPVE 107
Query: 778 VKXRSAHLD 804
V + +D
Sbjct: 108 VVQKFCRID 116
>AL662820-3|CAI18113.1| 610|Homo sapiens WD repeat domain 46
protein.
Length = 610
Score = 31.9 bits (69), Expect = 2.8
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 601 RKIRPN-PHLTILLKK*TGSKAPSCPPQPQKWEVKHRRAHLTSKMGSKAPKCPPQPQKWE 777
R++RP P +LKK SK P P +P++W+ + L+ G++ P P P E
Sbjct: 51 RELRPQRPKNAYILKKSRISKKPQVPKKPREWKNPESQRGLS---GTQDPFPGPAPVPVE 107
Query: 778 VKXRSAHLD 804
V + +D
Sbjct: 108 VVQKFCRID 116
>AL031228-6|CAA20229.1| 610|Homo sapiens chromosome 6 open reading
frame 11 protein.
Length = 610
Score = 31.9 bits (69), Expect = 2.8
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 601 RKIRPN-PHLTILLKK*TGSKAPSCPPQPQKWEVKHRRAHLTSKMGSKAPKCPPQPQKWE 777
R++RP P +LKK SK P P +P++W+ + L+ G++ P P P E
Sbjct: 51 RELRPQRPKNAYILKKSRISKKPQVPKKPREWKNPESQRGLS---GAQDPFPGPAPVPVE 107
Query: 778 VKXRSAHLD 804
V + +D
Sbjct: 108 VVQKFCRID 116
>BC015152-1|AAH15152.2| 537|Homo sapiens zinc finger protein 775
protein.
Length = 537
Score = 31.5 bits (68), Expect = 3.7
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Frame = +1
Query: 598 GRKIRPNPHLTILLKK*TGSKAPSCPP-----QPQKWEVKHRRAHLTSKMGSKAPKC 753
GR+ P+LT L+ TG + CP + ++ +KH R HL + P C
Sbjct: 315 GRRFSQKPNLTRHLRNHTGERPHPCPHCGRGFRQKQHLLKHLRTHLPGAQAAPCPSC 371
>AK027069-1|BAB15646.1| 171|Homo sapiens protein ( Homo sapiens
cDNA: FLJ23416 fis, clone HEP20790. ).
Length = 171
Score = 31.5 bits (68), Expect = 3.7
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +1
Query: 685 QKWEVKHRRAHL-TSKMGSKAPKCPPQPQKWEV 780
QKW V+ + + T SKAP PPQP W V
Sbjct: 52 QKWRVQWEMSQINTPGRHSKAPVMPPQPWSWGV 84
>DQ356012-1|ABC86955.1| 818|Homo sapiens ZNF438 transcript variant
3 protein.
Length = 818
Score = 31.1 bits (67), Expect = 4.9
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 385 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDFFTEL 498
H +RG+ + H EE SH CP+L+ HLH E+
Sbjct: 694 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQNGVEM 729
>DQ356011-1|ABC86954.1| 818|Homo sapiens ZNF438 transcript variant
2 protein.
Length = 818
Score = 31.1 bits (67), Expect = 4.9
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 385 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDFFTEL 498
H +RG+ + H EE SH CP+L+ HLH E+
Sbjct: 694 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQNGVEM 729
>BC104757-1|AAI04758.1| 828|Homo sapiens zinc finger protein 438
protein.
Length = 828
Score = 31.1 bits (67), Expect = 4.9
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 385 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDFFTEL 498
H +RG+ + H EE SH CP+L+ HLH E+
Sbjct: 704 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQNGVEM 739
>BC101622-1|AAI01623.1| 828|Homo sapiens ZNF438 transcript variant
3 protein.
Length = 828
Score = 31.1 bits (67), Expect = 4.9
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 385 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDFFTEL 498
H +RG+ + H EE SH CP+L+ HLH E+
Sbjct: 704 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQNGVEM 739
>AL359532-3|CAM17193.1| 828|Homo sapiens zinc finger protein 438
protein.
Length = 828
Score = 31.1 bits (67), Expect = 4.9
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 385 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDFFTEL 498
H +RG+ + H EE SH CP+L+ HLH E+
Sbjct: 704 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQNGVEM 739
>AL359532-2|CAI13438.1| 818|Homo sapiens zinc finger protein 438
protein.
Length = 818
Score = 31.1 bits (67), Expect = 4.9
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 385 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDFFTEL 498
H +RG+ + H EE SH CP+L+ HLH E+
Sbjct: 694 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQNGVEM 729
>AL359532-1|CAI13437.1| 392|Homo sapiens zinc finger protein 438
protein.
Length = 392
Score = 31.1 bits (67), Expect = 4.9
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 385 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDFFTEL 498
H +RG+ + H EE SH CP+L+ HLH E+
Sbjct: 268 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQNGVEM 303
>AK131357-1|BAD18510.1| 779|Homo sapiens protein ( Homo sapiens
cDNA FLJ16387 fis, clone TRACH2007483, weakly similar
to GASTRULA ZINC FINGER PROTEIN XLCGF7.1. ).
Length = 779
Score = 31.1 bits (67), Expect = 4.9
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 385 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDFFTEL 498
H +RG+ + H EE SH CP+L+ HLH E+
Sbjct: 655 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQNGVEM 690
>AF440405-1|AAP97319.1| 392|Homo sapiens unknown protein.
Length = 392
Score = 31.1 bits (67), Expect = 4.9
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 385 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDFFTEL 498
H +RG+ + H EE SH CP+L+ HLH E+
Sbjct: 268 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQNGVEM 303
>AF428258-1|AAP97298.1| 828|Homo sapiens hypothetical protein
protein.
Length = 828
Score = 31.1 bits (67), Expect = 4.9
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 385 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDFFTEL 498
H +RG+ + H EE SH CP+L+ HLH E+
Sbjct: 704 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQNGVEM 739
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,007,917
Number of Sequences: 237096
Number of extensions: 2829257
Number of successful extensions: 6888
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 6142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6870
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9980595722
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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