Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18b03
(806 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY121713-1|AAM52040.1| 959|Drosophila melanogaster SD04710p pro... 33 0.35
AY122256-1|AAM52768.1| 1153|Drosophila melanogaster SD07343p pro... 33 0.46
AF475087-1|AAL78679.1| 1985|Drosophila melanogaster transcriptio... 33 0.46
AF217844-1|AAF34752.1| 1966|Drosophila melanogaster GRUNGE protein. 33 0.46
AE014296-1461|AAN12008.1| 1966|Drosophila melanogaster CG6964-PA... 33 0.46
AE014296-1460|AAS65054.1| 1985|Drosophila melanogaster CG6964-PD... 33 0.46
AE014296-1459|AAF50413.2| 1985|Drosophila melanogaster CG6964-PB... 33 0.46
AE014296-1458|AAO41268.1| 1988|Drosophila melanogaster CG6964-PC... 33 0.46
AY075180-1|AAL68050.1| 398|Drosophila melanogaster AT12853p pro... 29 5.7
AE014134-808|AAF50957.4| 1286|Drosophila melanogaster CG3047-PA ... 29 5.7
AE014134-263|AAF51368.1| 440|Drosophila melanogaster CG18131-PD... 29 5.7
AE014134-262|AAN10475.1| 440|Drosophila melanogaster CG18131-PB... 29 5.7
AE014134-261|AAN10474.1| 401|Drosophila melanogaster CG18131-PC... 29 5.7
AE014134-260|AAN10473.1| 401|Drosophila melanogaster CG18131-PA... 29 5.7
AE014134-259|AAN10472.1| 510|Drosophila melanogaster CG18131-PE... 29 5.7
AE014134-258|AAN10471.1| 471|Drosophila melanogaster CG18131-PF... 29 5.7
AY061177-1|AAL28725.1| 101|Drosophila melanogaster LD14555p pro... 29 7.5
AE014296-3356|AAF51592.1| 2284|Drosophila melanogaster CG5847-PA... 29 7.5
AE014134-2568|AAF53440.2| 587|Drosophila melanogaster CG15269-P... 29 9.9
>AY121713-1|AAM52040.1| 959|Drosophila melanogaster SD04710p protein.
Length = 959
Score = 33.5 bits (73), Expect = 0.35
Identities = 21/67 (31%), Positives = 30/67 (44%)
Frame = +3
Query: 600 TQNPAESASNHTAQKINGK*STVVPTSTSKMGSKAPSCPPHLKNGK*STEVPTSTSKMGS 779
+Q+P E S ++ +GK S P S P PP K +T V T T ++GS
Sbjct: 829 SQSPTELVSASSSTSSSGKTSPTAPAVLS-----GPPTPPRQMQSKQATPVSTPTRQVGS 883
Query: 780 KAPKCPP 800
+ PP
Sbjct: 884 PKDQIPP 890
>AY122256-1|AAM52768.1| 1153|Drosophila melanogaster SD07343p
protein.
Length = 1153
Score = 33.1 bits (72), Expect = 0.46
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 649 TGSKAPSCPPQPQKWEVKHRRAHLTSKMGSKAP 747
+ S+ PS PPQPQ+++ H H+ S G P
Sbjct: 127 SNSQPPSMPPQPQQFQSPHPSPHMPSPAGGGLP 159
>AF475087-1|AAL78679.1| 1985|Drosophila melanogaster transcriptional
corepressor Atro protein.
Length = 1985
Score = 33.1 bits (72), Expect = 0.46
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 649 TGSKAPSCPPQPQKWEVKHRRAHLTSKMGSKAP 747
+ S+ PS PPQPQ+++ H H+ S G P
Sbjct: 959 SNSQPPSMPPQPQQFQSPHPSPHMPSPAGGGLP 991
>AF217844-1|AAF34752.1| 1966|Drosophila melanogaster GRUNGE protein.
Length = 1966
Score = 33.1 bits (72), Expect = 0.46
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 649 TGSKAPSCPPQPQKWEVKHRRAHLTSKMGSKAP 747
+ S+ PS PPQPQ+++ H H+ S G P
Sbjct: 959 SNSQPPSMPPQPQQFQSPHPSPHMPSPAGGGLP 991
>AE014296-1461|AAN12008.1| 1966|Drosophila melanogaster CG6964-PA,
isoform A protein.
Length = 1966
Score = 33.1 bits (72), Expect = 0.46
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 649 TGSKAPSCPPQPQKWEVKHRRAHLTSKMGSKAP 747
+ S+ PS PPQPQ+++ H H+ S G P
Sbjct: 959 SNSQPPSMPPQPQQFQSPHPSPHMPSPAGGGLP 991
>AE014296-1460|AAS65054.1| 1985|Drosophila melanogaster CG6964-PD,
isoform D protein.
Length = 1985
Score = 33.1 bits (72), Expect = 0.46
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 649 TGSKAPSCPPQPQKWEVKHRRAHLTSKMGSKAP 747
+ S+ PS PPQPQ+++ H H+ S G P
Sbjct: 959 SNSQPPSMPPQPQQFQSPHPSPHMPSPAGGGLP 991
>AE014296-1459|AAF50413.2| 1985|Drosophila melanogaster CG6964-PB,
isoform B protein.
Length = 1985
Score = 33.1 bits (72), Expect = 0.46
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 649 TGSKAPSCPPQPQKWEVKHRRAHLTSKMGSKAP 747
+ S+ PS PPQPQ+++ H H+ S G P
Sbjct: 959 SNSQPPSMPPQPQQFQSPHPSPHMPSPAGGGLP 991
>AE014296-1458|AAO41268.1| 1988|Drosophila melanogaster CG6964-PC,
isoform C protein.
Length = 1988
Score = 33.1 bits (72), Expect = 0.46
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 649 TGSKAPSCPPQPQKWEVKHRRAHLTSKMGSKAP 747
+ S+ PS PPQPQ+++ H H+ S G P
Sbjct: 959 SNSQPPSMPPQPQQFQSPHPSPHMPSPAGGGLP 991
>AY075180-1|AAL68050.1| 398|Drosophila melanogaster AT12853p
protein.
Length = 398
Score = 29.5 bits (63), Expect = 5.7
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 673 PPQPQKWEVK-HRRAHLTSKMGSKAPKCPPQPQK 771
PPQPQ + H H+ K AP+ PPQ Q+
Sbjct: 236 PPQPQLNAPRSHHHIHMPQKQQQVAPQPPPQQQQ 269
>AE014134-808|AAF50957.4| 1286|Drosophila melanogaster CG3047-PA
protein.
Length = 1286
Score = 29.5 bits (63), Expect = 5.7
Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Frame = +3
Query: 600 TQNPAESASNHTAQKINGK*STVVPTSTSKMGSKAPSCPPHLKNGK*STEVPTSTSKMGS 779
T P + + T + TSTS+ + P C + +T P ST+K +
Sbjct: 301 TTTPRCTTTTSTCSPTRTTPRSTTTTSTSRPTTTTPRCTTTPSTSRPTTTTPRSTTKTST 360
Query: 780 KAP-KCPPRP 806
AP PRP
Sbjct: 361 CAPTTTTPRP 370
>AE014134-263|AAF51368.1| 440|Drosophila melanogaster CG18131-PD,
isoform D protein.
Length = 440
Score = 29.5 bits (63), Expect = 5.7
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 673 PPQPQKWEVK-HRRAHLTSKMGSKAPKCPPQPQK 771
PPQPQ + H H+ K AP+ PPQ Q+
Sbjct: 275 PPQPQLNAPRSHHHIHMPQKQQQVAPQPPPQQQQ 308
>AE014134-262|AAN10475.1| 440|Drosophila melanogaster CG18131-PB,
isoform B protein.
Length = 440
Score = 29.5 bits (63), Expect = 5.7
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 673 PPQPQKWEVK-HRRAHLTSKMGSKAPKCPPQPQK 771
PPQPQ + H H+ K AP+ PPQ Q+
Sbjct: 275 PPQPQLNAPRSHHHIHMPQKQQQVAPQPPPQQQQ 308
>AE014134-261|AAN10474.1| 401|Drosophila melanogaster CG18131-PC,
isoform C protein.
Length = 401
Score = 29.5 bits (63), Expect = 5.7
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 673 PPQPQKWEVK-HRRAHLTSKMGSKAPKCPPQPQK 771
PPQPQ + H H+ K AP+ PPQ Q+
Sbjct: 236 PPQPQLNAPRSHHHIHMPQKQQQVAPQPPPQQQQ 269
>AE014134-260|AAN10473.1| 401|Drosophila melanogaster CG18131-PA,
isoform A protein.
Length = 401
Score = 29.5 bits (63), Expect = 5.7
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 673 PPQPQKWEVK-HRRAHLTSKMGSKAPKCPPQPQK 771
PPQPQ + H H+ K AP+ PPQ Q+
Sbjct: 236 PPQPQLNAPRSHHHIHMPQKQQQVAPQPPPQQQQ 269
>AE014134-259|AAN10472.1| 510|Drosophila melanogaster CG18131-PE,
isoform E protein.
Length = 510
Score = 29.5 bits (63), Expect = 5.7
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 673 PPQPQKWEVK-HRRAHLTSKMGSKAPKCPPQPQK 771
PPQPQ + H H+ K AP+ PPQ Q+
Sbjct: 345 PPQPQLNAPRSHHHIHMPQKQQQVAPQPPPQQQQ 378
>AE014134-258|AAN10471.1| 471|Drosophila melanogaster CG18131-PF,
isoform F protein.
Length = 471
Score = 29.5 bits (63), Expect = 5.7
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 673 PPQPQKWEVK-HRRAHLTSKMGSKAPKCPPQPQK 771
PPQPQ + H H+ K AP+ PPQ Q+
Sbjct: 306 PPQPQLNAPRSHHHIHMPQKQQQVAPQPPPQQQQ 339
>AY061177-1|AAL28725.1| 101|Drosophila melanogaster LD14555p
protein.
Length = 101
Score = 29.1 bits (62), Expect = 7.5
Identities = 22/69 (31%), Positives = 32/69 (46%)
Frame = -2
Query: 247 ICFC*EMKRSRTPRRQERPCYRILATPDREPALKL*KRSLAAPLPLFCAWRSCVRFLLKH 68
+C C K ++T +R E+ C R L T ALK K AP P C + ++ +L+
Sbjct: 26 VCACVGAKWNQTSQRVEQCCQRSLIT-----ALKK-KSPFFAPPPPLCQRKLKIQIVLQK 79
Query: 67 VWDLCNFNS 41
W F S
Sbjct: 80 FWLPWKFKS 88
>AE014296-3356|AAF51592.1| 2284|Drosophila melanogaster CG5847-PA
protein.
Length = 2284
Score = 29.1 bits (62), Expect = 7.5
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Frame = +3
Query: 663 TVVPTSTSKMGSKAPSCPPHLKNGK*STEVPTSTSK----MGSKAPKCPP 800
T+ P GSK P CP + +T PTSTS+ GS P+C P
Sbjct: 945 TIAPKPRCYPGSKDPGCP------QITTRAPTSTSRPRCYPGSTDPECHP 988
>AE014134-2568|AAF53440.2| 587|Drosophila melanogaster CG15269-PA
protein.
Length = 587
Score = 28.7 bits (61), Expect = 9.9
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +1
Query: 598 GRKIRPNPHLTILLKK*TGSKAPSCPPQPQKWEVKHR-RAHLTSKMGSKAPKCP 756
G+ ++T+ + +G K SCP P+ + KH + HL G K CP
Sbjct: 445 GKSFADRSNMTLHHRLHSGIKPFSCPLCPKAFTKKHHLKTHLNYHTGCKPYVCP 498
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,845,765
Number of Sequences: 53049
Number of extensions: 844777
Number of successful extensions: 2510
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 2290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2509
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3777934368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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