Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18b03
(806 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p... 33 0.24
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ... 33 0.24
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha... 33 0.24
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 31 0.73
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 31 0.73
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 31 0.73
AF016450-10|AAB65990.1| 166|Caenorhabditis elegans Hypothetical... 29 3.9
AF106583-4|AAD03135.1| 417|Caenorhabditis elegans Hypothetical ... 29 5.2
Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical pr... 28 6.8
U53147-4|AAA96115.1| 668|Caenorhabditis elegans Temporarily ass... 28 6.8
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 28 9.0
U61958-1|AAB03183.1| 416|Caenorhabditis elegans Hypothetical pr... 28 9.0
>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 33.1 bits (72), Expect = 0.24
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Frame = +2
Query: 557 QILNITDTTQLNSRDAKSGRIRI*PYCSKNKREVKHRRAHLN-LKNG--K*STVVPTSPQ 727
Q+ + + + L++ D S ++I K K+++ R HLN LK K V+
Sbjct: 2085 QLEKLKNESSLSNVD-NSNAVKIVEELKKEKKDLTDRLGHLNELKTSIVKRLGVIKNEAS 2143
Query: 728 KWEVKHRSAHLNLKNG 775
W+ KH H LKNG
Sbjct: 2144 SWDDKHDRMHSILKNG 2159
>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 33.1 bits (72), Expect = 0.24
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Frame = +2
Query: 557 QILNITDTTQLNSRDAKSGRIRI*PYCSKNKREVKHRRAHLN-LKNG--K*STVVPTSPQ 727
Q+ + + + L++ D S ++I K K+++ R HLN LK K V+
Sbjct: 2085 QLEKLKNESSLSNVD-NSNAVKIVEELKKEKKDLTDRLGHLNELKTSIVKRLGVIKNEAS 2143
Query: 728 KWEVKHRSAHLNLKNG 775
W+ KH H LKNG
Sbjct: 2144 SWDDKHDRMHSILKNG 2159
>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3102
Score = 33.1 bits (72), Expect = 0.24
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Frame = +2
Query: 557 QILNITDTTQLNSRDAKSGRIRI*PYCSKNKREVKHRRAHLN-LKNG--K*STVVPTSPQ 727
Q+ + + + L++ D S ++I K K+++ R HLN LK K V+
Sbjct: 2085 QLEKLKNESSLSNVD-NSNAVKIVEELKKEKKDLTDRLGHLNELKTSIVKRLGVIKNEAS 2143
Query: 728 KWEVKHRSAHLNLKNG 775
W+ KH H LKNG
Sbjct: 2144 SWDDKHDRMHSILKNG 2159
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 31.5 bits (68), Expect = 0.73
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 10/90 (11%)
Frame = +3
Query: 567 TLQTQHS*TVGTQNP-AESASNHTAQKINGK*---STVVPTSTSKMGSKAPSCPPHLKNG 734
T+ + S T G+ P A S+S TA I+G +T+VP S+S +GS S P
Sbjct: 241 TVVSGSSSTYGSSTPSASSSSAGTASTISGSTGSTATIVPGSSSSVGSSTQSASPSSPGT 300
Query: 735 K*STEVPTSTS------KMGSKAPKCPPRP 806
+ PT ++ S AP P P
Sbjct: 301 MSTVSGPTGSTVTVVPGSSTSPAPSSSPNP 330
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 31.5 bits (68), Expect = 0.73
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 10/90 (11%)
Frame = +3
Query: 567 TLQTQHS*TVGTQNP-AESASNHTAQKINGK*---STVVPTSTSKMGSKAPSCPPHLKNG 734
T+ + S T G+ P A S+S TA I+G +T+VP S+S +GS S P
Sbjct: 448 TVVSGSSSTYGSSTPSASSSSAGTASTISGSTGSTATIVPGSSSSVGSSTQSASPSSPGT 507
Query: 735 K*STEVPTSTS------KMGSKAPKCPPRP 806
+ PT ++ S AP P P
Sbjct: 508 MSTVSGPTGSTVTVVPGSSTSPAPSSSPNP 537
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
protein K06A9.1b protein.
Length = 2232
Score = 31.5 bits (68), Expect = 0.73
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 10/90 (11%)
Frame = +3
Query: 567 TLQTQHS*TVGTQNP-AESASNHTAQKINGK*---STVVPTSTSKMGSKAPSCPPHLKNG 734
T+ + S T G+ P A S+S TA I+G +T+VP S+S +GS S P
Sbjct: 448 TVVSGSSSTYGSSTPSASSSSAGTASTISGSTGSTATIVPGSSSSVGSSTQSASPSSPGT 507
Query: 735 K*STEVPTSTS------KMGSKAPKCPPRP 806
+ PT ++ S AP P P
Sbjct: 508 MSTVSGPTGSTVTVVPGSSTSPAPSSSPNP 537
>AF016450-10|AAB65990.1| 166|Caenorhabditis elegans Hypothetical
protein B0238.12 protein.
Length = 166
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/65 (26%), Positives = 27/65 (41%)
Frame = -1
Query: 317 GCIFFCYVTEGDLVDASSDVAGRDMLLLRDEAVEDASPSGTAVLPNPGNPRPRASAKTIK 138
GC + Y + ++ V G L R E+ GTA P+ NP P + + I
Sbjct: 12 GC--YVYAQDAQILPVGGQVGGGQRLPCRGRN-EEYKTCGTACEPSCTNPNPMCTKQCIN 68
Query: 137 TIPRC 123
+ +C
Sbjct: 69 NVCQC 73
>AF106583-4|AAD03135.1| 417|Caenorhabditis elegans Hypothetical
protein F23C8.7 protein.
Length = 417
Score = 28.7 bits (61), Expect = 5.2
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 9/82 (10%)
Frame = +1
Query: 526 SALLSAIFTDTDTEHY--RHNTAKQ*GRKIRPNPHLTILLKK*TGSKAP-------SCPP 678
SA+ S D +HY R N++ Q + + + L+ SK P P
Sbjct: 49 SAMQSEELEDAGVKHYVMRLNSSNQIFLEAKGFETIASLVNYYMSSKEPIKKLTVLKTPI 108
Query: 679 QPQKWEVKHRRAHLTSKMGSKA 744
Q WE++H + LT K+G A
Sbjct: 109 LKQPWEIEHSQVELTKKLGEGA 130
>Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical protein
T12D8.1 protein.
Length = 2561
Score = 28.3 bits (60), Expect = 6.8
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Frame = -1
Query: 302 CYVTEGDLVDASSDVAG------RDMLLLRDE---AVEDASPSGTAVLPNPGNPRPRASA 150
C +TE VD DV G RD+L ++DE ++ED P P +P P A+
Sbjct: 1670 CDITEESSVDEKKDVCGRLHEQIRDLLAIKDEVAWSMEDTPPES----PVSRSPEPEATV 1725
Query: 149 KTIK 138
++
Sbjct: 1726 GAVQ 1729
>Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical protein
T12D8.1 protein.
Length = 2561
Score = 28.3 bits (60), Expect = 6.8
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Frame = -1
Query: 302 CYVTEGDLVDASSDVAG------RDMLLLRDE---AVEDASPSGTAVLPNPGNPRPRASA 150
C +TE VD DV G RD+L ++DE ++ED P P +P P A+
Sbjct: 1670 CDITEESSVDEKKDVCGRLHEQIRDLLAIKDEVAWSMEDTPPES----PVSRSPEPEATV 1725
Query: 149 KTIK 138
++
Sbjct: 1726 GAVQ 1729
>U53147-4|AAA96115.1| 668|Caenorhabditis elegans Temporarily
assigned gene nameprotein 117 protein.
Length = 668
Score = 28.3 bits (60), Expect = 6.8
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Frame = +3
Query: 609 PAESASNHTAQKINGK*STVVPTSTSKMGSKAPSC-----PPHLKNGK*STEVPTSTSKM 773
P ++A T ++ NGK T + G + SC PP + NG +E STS
Sbjct: 164 PIQAAIEQTVKQ-NGKCGTTSSGIGTDSGGDSSSCTSSPIPPVIMNGNGKSERCPSTSSS 222
Query: 774 GSKAPKCPP 800
S +P+ P
Sbjct: 223 SSVSPRNAP 231
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 27.9 bits (59), Expect = 9.0
Identities = 17/68 (25%), Positives = 29/68 (42%)
Frame = +3
Query: 603 QNPAESASNHTAQKINGK*STVVPTSTSKMGSKAPSCPPHLKNGK*STEVPTSTSKMGSK 782
++P++S S + + S P + S + S PP K K ++ P + +
Sbjct: 321 RSPSQSKSPAPKRAKSRSKSPPAPARRRRSPSASKSPPPAPKRAKSRSKSPPARRRRSPS 380
Query: 783 APKCPPRP 806
A K PP P
Sbjct: 381 ASKSPPAP 388
>U61958-1|AAB03183.1| 416|Caenorhabditis elegans Hypothetical
protein C25A8.5 protein.
Length = 416
Score = 27.9 bits (59), Expect = 9.0
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 9/82 (10%)
Frame = +1
Query: 526 SALLSAIFTDTDTEHY--RHNTAKQ*GRKIRPNPHLTILLKK*TGSKAP-------SCPP 678
SA+ S D +HY R N + Q + + + L+ SK P P
Sbjct: 49 SAMQSEELEDAGVKHYVMRLNPSNQIFLEAKGFETIASLVNYYMNSKEPIKKMTVLKTPI 108
Query: 679 QPQKWEVKHRRAHLTSKMGSKA 744
Q WE++H + LT K+G A
Sbjct: 109 LKQPWEIEHSQVELTKKLGEGA 130
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,367,191
Number of Sequences: 27780
Number of extensions: 430298
Number of successful extensions: 1228
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1221
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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