Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18b02
         (622 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q16K29 Cluster: DNA-directed RNA polymerase; n=1; Aedes...    33   7.3  
UniRef50_Q8DL69 Cluster: Processing proteinase; n=1; Synechococc...    32   9.6  

>UniRef50_Q16K29 Cluster: DNA-directed RNA polymerase; n=1; Aedes
            aegypti|Rep: DNA-directed RNA polymerase - Aedes aegypti
            (Yellowfever mosquito)
          Length = 1686

 Score = 32.7 bits (71), Expect = 7.3
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +2

Query: 137  VIWKLDNIRLQLVG*FN-LYYIKYTTVNDYEMTRLNRTQSTNRLLALKLYNLNKT 298
            V+W++ NIR  +    N   Y+K   +N Y MT+  ++   NRL +  +Y + +T
Sbjct: 1520 VVWEIPNIRRAITYVQNDQLYLKTDGINIYAMTKFYKSLDLNRLYSNDIYAIAQT 1574


>UniRef50_Q8DL69 Cluster: Processing proteinase; n=1; Synechococcus
           elongatus|Rep: Processing proteinase - Synechococcus
           elongatus (Thermosynechococcus elongatus)
          Length = 483

 Score = 32.3 bits (70), Expect = 9.6
 Identities = 18/61 (29%), Positives = 32/61 (52%)
 Frame = +2

Query: 107 TSRVSLFYSAVIWKLDNIRLQLVG*FNLYYIKYTTVNDYEMTRLNRTQSTNRLLALKLYN 286
           T   + F SA+  +++ ++ + VG   L Y K + +N +     +R Q  NRLL  + Y+
Sbjct: 367 TETTAKFLSALRQEIERLQQEPVGSAELNYAKDSILNSFVFNFRDRLQILNRLLRYEYYD 426

Query: 287 L 289
           L
Sbjct: 427 L 427


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 449,091,641
Number of Sequences: 1657284
Number of extensions: 7127129
Number of successful extensions: 10942
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 10746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10940
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 45221970467
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)