Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18b02
(622 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF322227-1|AAK01654.1| 782|Tribolium castaneum cell surface pro... 23 1.6
EF592538-1|ABQ95984.1| 582|Tribolium castaneum beta-N-acetylglu... 22 4.8
AM292340-1|CAL23152.1| 355|Tribolium castaneum gustatory recept... 22 4.8
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ... 21 6.3
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ... 21 6.3
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ... 21 6.3
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ... 21 6.3
AM292377-1|CAL23189.2| 358|Tribolium castaneum gustatory recept... 21 8.3
AM292342-1|CAL23154.2| 386|Tribolium castaneum gustatory recept... 21 8.3
>AF322227-1|AAK01654.1| 782|Tribolium castaneum cell surface
protein chaoptin protein.
Length = 782
Score = 23.4 bits (48), Expect = 1.6
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = -1
Query: 199 NII*IKLSH*LQSNVIEFPNDS 134
+++ +KL+H L S+V FP+D+
Sbjct: 16 SLLTLKLTHALSSSVQNFPSDA 37
>EF592538-1|ABQ95984.1| 582|Tribolium castaneum
beta-N-acetylglucosaminidase NAG3 protein.
Length = 582
Score = 21.8 bits (44), Expect = 4.8
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 422 IKLCINFVNSSQNIGKLK 475
IKL IN + S N KLK
Sbjct: 136 IKLSINIILSDPNTNKLK 153
>AM292340-1|CAL23152.1| 355|Tribolium castaneum gustatory
receptor candidate 19 protein.
Length = 355
Score = 21.8 bits (44), Expect = 4.8
Identities = 7/16 (43%), Positives = 13/16 (81%)
Frame = +3
Query: 30 KKKNVSITNIILHSLQ 77
KK+ +++N+ LHSL+
Sbjct: 15 KKRKCTVSNVSLHSLK 30
>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
variant 2 protein.
Length = 1558
Score = 21.4 bits (43), Expect = 6.3
Identities = 10/43 (23%), Positives = 21/43 (48%)
Frame = +2
Query: 494 LF*YWSYQMIPHINSISNIFGNCTTINAKRXSVKHFXLHXFTQ 622
+F +W +P + S+ C ++K+ + HF + FT+
Sbjct: 136 IFAFW----VPQLGSLFRSSRMCFFKSSKKPAFSHFLIVFFTE 174
Score = 21.0 bits (42), Expect = 8.3
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 606 NXKCLTLXLFALIVVQFPKIFEIELICGII 517
N KCL + + L +V + F I L G+I
Sbjct: 59 NQKCLEITVKILKIVAYLVTFVIVLGSGVI 88
>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
variant 1 protein.
Length = 1558
Score = 21.4 bits (43), Expect = 6.3
Identities = 10/43 (23%), Positives = 21/43 (48%)
Frame = +2
Query: 494 LF*YWSYQMIPHINSISNIFGNCTTINAKRXSVKHFXLHXFTQ 622
+F +W +P + S+ C ++K+ + HF + FT+
Sbjct: 136 IFAFW----VPQLGSLFRSSRMCFFKSSKKPAFSHFLIVFFTE 174
Score = 21.0 bits (42), Expect = 8.3
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 606 NXKCLTLXLFALIVVQFPKIFEIELICGII 517
N KCL + + L +V + F I L G+I
Sbjct: 59 NQKCLEITVKILKIVAYLVTFVIVLGSGVI 88
>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
CHS1B protein.
Length = 1558
Score = 21.4 bits (43), Expect = 6.3
Identities = 10/43 (23%), Positives = 21/43 (48%)
Frame = +2
Query: 494 LF*YWSYQMIPHINSISNIFGNCTTINAKRXSVKHFXLHXFTQ 622
+F +W +P + S+ C ++K+ + HF + FT+
Sbjct: 136 IFAFW----VPQLGSLFRSSRMCFFKSSKKPAFSHFLIVFFTE 174
Score = 21.0 bits (42), Expect = 8.3
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 606 NXKCLTLXLFALIVVQFPKIFEIELICGII 517
N KCL + + L +V + F I L G+I
Sbjct: 59 NQKCLEITVKILKIVAYLVTFVIVLGSGVI 88
>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
CHS1A protein.
Length = 1558
Score = 21.4 bits (43), Expect = 6.3
Identities = 10/43 (23%), Positives = 21/43 (48%)
Frame = +2
Query: 494 LF*YWSYQMIPHINSISNIFGNCTTINAKRXSVKHFXLHXFTQ 622
+F +W +P + S+ C ++K+ + HF + FT+
Sbjct: 136 IFAFW----VPQLGSLFRSSRMCFFKSSKKPAFSHFLIVFFTE 174
Score = 21.0 bits (42), Expect = 8.3
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 606 NXKCLTLXLFALIVVQFPKIFEIELICGII 517
N KCL + + L +V + F I L G+I
Sbjct: 59 NQKCLEITVKILKIVAYLVTFVIVLGSGVI 88
>AM292377-1|CAL23189.2| 358|Tribolium castaneum gustatory receptor
candidate 56 protein.
Length = 358
Score = 21.0 bits (42), Expect = 8.3
Identities = 9/34 (26%), Positives = 17/34 (50%)
Frame = +2
Query: 158 IRLQLVG*FNLYYIKYTTVNDYEMTRLNRTQSTN 259
+ LQ N+ ++Y +N+Y T + T T+
Sbjct: 194 MELQYCHYLNILRVRYQLLNEYLETLVQETNRTS 227
>AM292342-1|CAL23154.2| 386|Tribolium castaneum gustatory receptor
candidate 21 protein.
Length = 386
Score = 21.0 bits (42), Expect = 8.3
Identities = 9/34 (26%), Positives = 17/34 (50%)
Frame = +2
Query: 158 IRLQLVG*FNLYYIKYTTVNDYEMTRLNRTQSTN 259
+ LQ N+ ++Y +N+Y T + T T+
Sbjct: 194 MELQYCHYLNILRVRYQLLNEYLETLVQETNRTS 227
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,274
Number of Sequences: 336
Number of extensions: 2155
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15875032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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