Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18b01
(602 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|... 222 4e-59
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12... 222 4e-59
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 29 0.69
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 29 0.69
SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces... 28 1.2
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 26 4.9
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c... 25 6.4
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo... 25 6.4
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom... 25 8.5
>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
Length = 165
Score = 222 bits (542), Expect = 4e-59
Identities = 99/146 (67%), Positives = 127/146 (86%)
Frame = -1
Query: 482 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITV 303
MPPKFDPNE+K + +R VGGEV S+LAPKIGPLGLSPKKVG+DIAKAT DWKGL++TV
Sbjct: 1 MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTV 60
Query: 302 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVVGIAKIMRNRS 123
+LT+QNRQA ++VVPSA+AL+I+ALKEP RDRKK KN+ H+GN+SL++++ +A+ MR +S
Sbjct: 61 KLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFKS 120
Query: 122 MARYLSGSVKEILGTAQSVGCXCGGQ 45
+A+ LSG+VKEILGTA SVGC G+
Sbjct: 121 LAKELSGTVKEILGTAFSVGCTVDGK 146
>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
Length = 165
Score = 222 bits (542), Expect = 4e-59
Identities = 99/146 (67%), Positives = 127/146 (86%)
Frame = -1
Query: 482 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITV 303
MPPKFDPNE+K + +R VGGEV S+LAPKIGPLGLSPKKVG+DIAKAT DWKGL++TV
Sbjct: 1 MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTV 60
Query: 302 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVVGIAKIMRNRS 123
+LT+QNRQA ++VVPSA+AL+I+ALKEP RDRKK KN+ H+GN+SL++++ +A+ MR +S
Sbjct: 61 KLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFKS 120
Query: 122 MARYLSGSVKEILGTAQSVGCXCGGQ 45
+A+ LSG+VKEILGTA SVGC G+
Sbjct: 121 LAKELSGTVKEILGTAFSVGCTVDGK 146
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 28.7 bits (61), Expect = 0.69
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +1
Query: 49 PPQXHPTDCAVPRISFTEPERYRAIDLFLMIFAMPTTSSREMLPLCLIF 195
P + +P + PR T +R + + + P TSSR LPL +++
Sbjct: 213 PTESNPMFLSTPRFQNTNGQRTLTVPVSVWDARQPPTSSRSGLPLSVMY 261
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 28.7 bits (61), Expect = 0.69
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +1
Query: 52 PQXHPTDCAVPRISFTEPERYRAIDLFLMIFAMP-TTSSREMLPL 183
P P V R+ ++PE DLFL I A+ TSS+ +LPL
Sbjct: 1466 PSLPPLIDLVKRLITSDPEGVLKKDLFLFIRALALRTSSKHLLPL 1510
>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 172
Score = 27.9 bits (59), Expect = 1.2
Identities = 18/76 (23%), Positives = 32/76 (42%)
Frame = -1
Query: 314 KITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVVGIAKIM 135
K + Q ++ N + V ++ L LKE +D++K ++ S + A+
Sbjct: 23 KPSQQASIPNVELSSTVTSNSQVLNNDPLKETKKDKRKDRHFNWQQKFSNPKISASARKR 82
Query: 134 RNRSMARYLSGSVKEI 87
RNR L +V I
Sbjct: 83 RNRKARENLKVNVSSI 98
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = -3
Query: 180 RQHLP*RCSRHCEDHEKQINGPVPFWLSKRD 88
+ H+ +C HC H + PVP +K D
Sbjct: 162 KTHIDHKCKEHCSCHHDKFPRPVPHNGTKPD 192
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -3
Query: 186 TQRQHLP*RCSRHCEDHEKQINGPVPFWLSKRD 88
T+ H P + HC H + + PVP +K D
Sbjct: 328 TKPDHKPWKHEEHCSCHHDKFSRPVPHNGTKPD 360
>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 204 FTVTGRLLKGSDDKGCCR 257
F VTG +L S D GC R
Sbjct: 297 FNVTGTILSSSGDDGCVR 314
>SPCC126.09 |||vacuolar membrane zinc transporter
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 418
Score = 25.4 bits (53), Expect = 6.4
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +1
Query: 67 TDCAVPRISFTEPERYRAIDLFLMIFAMPTTSSREMLPLCLIFFCFLRSRG 219
T+ ++ E Y LFL+ F + TT +L L + FC + G
Sbjct: 2 TEMSIRLFLHLSKEFYDCCGLFLLTFFLLTTCQLRILSLSINAFCVFGASG 52
>SPBC725.14 |arg6||acetylglutamate synthase Arg6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 500
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 403 DDVAPTSPPTHRKFTILI 456
D++A T PP HRK IL+
Sbjct: 249 DELAKTLPPYHRKNLILV 266
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,534,738
Number of Sequences: 5004
Number of extensions: 51324
Number of successful extensions: 130
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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