Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18a22
(525 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706... 159 2e-39
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560... 157 5e-39
10_07_0139 + 13327851-13327880,13327999-13329049,13329089-133296... 29 1.7
02_01_0295 - 1973115-1973404,1974138-1974663 29 1.7
07_01_0673 - 5044940-5045479,5046514-5046579 29 3.0
01_02_0020 - 10269252-10269314,10269442-10269483,10269759-102702... 29 3.0
06_01_0288 - 2106113-2109055 27 7.0
06_01_1036 + 8134132-8134539,8134885-8134956,8134969-8135088,813... 27 9.2
04_01_0377 - 4970034-4970687 27 9.2
>07_03_1309 +
25669394-25669399,25669520-25669584,25670543-25670600,
25670683-25670791,25670872-25671144,25671348-25671589
Length = 250
Score = 159 bits (385), Expect = 2e-39
Identities = 89/157 (56%), Positives = 104/157 (66%), Gaps = 4/157 (2%)
Frame = -2
Query: 524 GHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKR 351
G C+R RRDGER+RKSVRGCIV +LSV+ LVIV+KG ++PGLTD PR GPKR
Sbjct: 80 GTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGENDLPGLTDTEKPRMRGPKR 139
Query: 350 ASKIRKLFNLSKEDDVRRYV--VKRVLPAKEGKENAKPRHKAPKIQRLVTPVVLQXXXXX 177
ASKIRKLFNLSK+DDVR+YV +R K GK+ + KAPKIQRLVTP+ LQ
Sbjct: 140 ASKIRKLFNLSKDDDVRKYVNTYRRTFTTKNGKKVS----KAPKIQRLVTPLTLQRKRAR 195
Query: 176 XXXXXXXXXXXKSSEAEYAKLLAQRKKESKVRRQEEI 66
KS AEY KLLAQR KE + RR E +
Sbjct: 196 IADKKKRIAKKKSEAAEYQKLLAQRLKEQRERRSESL 232
>03_03_0207 -
15455163-15455389,15455623-15455895,15455991-15456099,
15456186-15456243,15457002-15457066,15457190-15457195
Length = 245
Score = 157 bits (381), Expect = 5e-39
Identities = 88/157 (56%), Positives = 104/157 (66%), Gaps = 4/157 (2%)
Frame = -2
Query: 524 GHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKR 351
G C+R RRDGER+RKSVRGCIV +LSV+ LVIV+KG ++PGLTD PR GPKR
Sbjct: 80 GTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGDNDLPGLTDTEKPRMRGPKR 139
Query: 350 ASKIRKLFNLSKEDDVRRYV--VKRVLPAKEGKENAKPRHKAPKIQRLVTPVVLQXXXXX 177
ASKIRKLFNL+K+DDVR+YV +R K GK+ + KAPKIQRLVTP+ LQ
Sbjct: 140 ASKIRKLFNLAKDDDVRKYVNTYRRTFTTKNGKKVS----KAPKIQRLVTPLTLQRKRAR 195
Query: 176 XXXXXXXXXXXKSSEAEYAKLLAQRKKESKVRRQEEI 66
KS AEY KLLAQR KE + RR E +
Sbjct: 196 IAQKKQRIAKKKSEAAEYQKLLAQRLKEQRERRSESL 232
>10_07_0139 +
13327851-13327880,13327999-13329049,13329089-13329648,
13329757-13329904,13330935-13331024,13331148-13331208,
13331301-13331450,13331571-13331629,13332148-13332282,
13333028-13333119,13333210-13333278
Length = 814
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/53 (24%), Positives = 32/53 (60%)
Frame = -2
Query: 368 RLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRLV 210
++ PK+A ++ + + +DD+ R V + +P+++ + A+ ++PK +R V
Sbjct: 325 KVEPKKAHCSDRISHKTTQDDMERKVPSKYIPSEKKGKTAESCSRSPKRERRV 377
>02_01_0295 - 1973115-1973404,1974138-1974663
Length = 271
Score = 29.5 bits (63), Expect = 1.7
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Frame = -2
Query: 524 GHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLT--DGNVPRRLGPKR 351
G S + + G ++ RG + + S AL + GA PG +P R+G +
Sbjct: 167 GKSIGKGFQGGIKRHNFKRGLMTHGSKSHRALGSI--GAGTTPGRVYKGKKMPGRMGGTK 224
Query: 350 ASKIRKLFNLSKEDDVRRYVVKRVLPAKEG 261
+KIRKL + ++D++ ++K +P K G
Sbjct: 225 -TKIRKLKIVKIDNDLKVVMIKGAVPGKPG 253
>07_01_0673 - 5044940-5045479,5046514-5046579
Length = 201
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -3
Query: 115 CLHRERRNPRCVARKRSNAGAQLQCVIPRALAR 17
C+ R RR R R+R N AQL + A+AR
Sbjct: 39 CIRRRRRGIRGGRRRRENGKAQLPVCLDAAVAR 71
>01_02_0020 -
10269252-10269314,10269442-10269483,10269759-10270244,
10270338-10270421,10270491-10270556,10270718-10270810,
10270901-10271987,10273338-10273362,10273881-10273899
Length = 654
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 111 CTEKEGIQGASPGRDQTQALSFN 43
C KE IQGA+PG Q Q + N
Sbjct: 599 CLNKEAIQGANPGDSQMQIIMQN 621
>06_01_0288 - 2106113-2109055
Length = 980
Score = 27.5 bits (58), Expect = 7.0
Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 6/121 (4%)
Frame = +3
Query: 72 FLATHLGFLLSLCKQFSIFS------LRGLALSETLLLQSETMTSTLQNYRGD*PLDLRC 233
+L LG L++L + + FS L L + L L S ++ + + G+ L C
Sbjct: 659 WLGDSLGSLITLSLRSNQFSGEIPESLPQLHALQNLDLASNKLSGPVPQFLGN--LTSMC 716
Query: 234 LMSGFSVFFSFLSWEHAFDDITTYIIFFAKVEQLTDFGSTFGT*TAGYISISQSRNFLGT 413
+ G++V + + D TY+ ++L + ST+ +I +S+++ F G
Sbjct: 717 VDHGYAVMIPSAKFATVYTDGRTYLAIHVYTDKLESYSSTYDY-PLNFIDLSRNQ-FTGE 774
Query: 414 L 416
+
Sbjct: 775 I 775
>06_01_1036 +
8134132-8134539,8134885-8134956,8134969-8135088,
8135179-8135256,8135442-8135697,8136427-8136515,
8137229-8137376,8137460-8137899,8138048-8138562,
8138791-8139061,8139231-8139492,8139583-8139938
Length = 1004
Score = 27.1 bits (57), Expect = 9.2
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +3
Query: 120 SIFSLRGLALSETLLLQSETMTSTLQNYRGD*PLDLRCL 236
S+ SL+G A+ LLQS + +T QN+ + LRCL
Sbjct: 515 SLQSLQGKAIEPLELLQSLLLPATKQNHDDVQRVALRCL 553
>04_01_0377 - 4970034-4970687
Length = 217
Score = 27.1 bits (57), Expect = 9.2
Identities = 14/45 (31%), Positives = 18/45 (40%)
Frame = -1
Query: 474 SSWMYC*RQSLGLGSCYCAQGCPGNSWID*WKCTPPSRSQTCFQN 340
S W YC GLGS +C GC + +C + C N
Sbjct: 123 SQWGYC-----GLGSEFCGNGCQSGACCPEKRCGKQAGGDKCPNN 162
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,382,534
Number of Sequences: 37544
Number of extensions: 251503
Number of successful extensions: 709
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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