Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18a21
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    27   2.2  
SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr 3...    27   3.9  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    25   8.9  

>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -1

Query: 705 TIIVMYKPTETSTMILTILRNITDIFVFITL 613
           T+ ++Y P +TST+ L  LR  T +F  +TL
Sbjct: 245 TLAILYSPEQTSTVTLP-LRKDTVLFSLVTL 274


>SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 227

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
 Frame = -2

Query: 617 HCYLRLMKLKIL----TISREHYDRLPFYVLVIFKNV 519
           H  LRLM  K L    T+S   Y  LP  V+  FKN+
Sbjct: 132 HFVLRLMSAKNLFFTRTVSVLGYSLLPLVVIAFFKNI 168


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +2

Query: 596  SLTVSNNVIKTKISVIFLNIVKIIVLVSVGLYITIIVL*HSCYKIIY 736
            SL +  NV+  +  V+F N+V  I  + +  YI  + +    YK ++
Sbjct: 868  SLCILRNVLSLQ-RVLFKNVVPYIAELGISKYILDLTISRRAYKEVF 913


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,988,829
Number of Sequences: 5004
Number of extensions: 61171
Number of successful extensions: 110
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)