Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18a21
         (762 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1086 - 30725010-30725138,30725748-30725786,30725876-307259...    28   7.1  

>04_04_1086 -
           30725010-30725138,30725748-30725786,30725876-30725998,
           30726953-30727015,30727540-30727620,30727998-30728088,
           30728295-30728366,30728452-30728552,30728681-30728779,
           30729132-30729329,30730792-30730824,30731084-30731192,
           30732088-30732149,30732388-30732468,30732549-30732704,
           30732812-30732976,30733351-30733413,30733492-30733545,
           30733574-30733612,30733727-30733783,30733862-30733930,
           30734022-30734135,30734216-30734284,30734821-30734927,
           30735207-30735363
          Length = 776

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +3

Query: 6   LQNRLENVK*LHFIV---SCIPTKLSMNI*MHNFIYCWNYIKMTT*AF 140
           L N LE+V   HF++   SC+P        +HNF Y +NY+  T  +F
Sbjct: 560 LANALEDVDNQHFVLLSDSCVP--------LHNFDYVYNYLIGTNISF 599


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,767,542
Number of Sequences: 37544
Number of extensions: 273828
Number of successful extensions: 381
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)