Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18a21
         (762 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006744-1|AAF60506.2|  328|Caenorhabditis elegans Serpentine re...    29   3.6  
Z66564-8|CAM84731.1|  892|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AL032659-3|CAA21749.2|  892|Caenorhabditis elegans Hypothetical ...    28   6.3  

>AC006744-1|AAF60506.2|  328|Caenorhabditis elegans Serpentine
           receptor, class t protein52 protein.
          Length = 328

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +2

Query: 632 ISVIFLNIVKIIVLVSVGLYITIIVL*HSCYKIIYRLDDID 754
           I +IF  IV+I+ +  +G      +L HSCYKI++ L   D
Sbjct: 40  ILIIFGIIVEILYVPCLGAIYKKKLLQHSCYKIMFLLGITD 80


>Z66564-8|CAM84731.1|  892|Caenorhabditis elegans Hypothetical
           protein Y71H9A.1 protein.
          Length = 892

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 664 DFDYIKEYYRYFCFYNIVTYG 602
           D+DY K +Y +FC    + YG
Sbjct: 518 DWDYFKSFYFFFCSLTTIGYG 538


>AL032659-3|CAA21749.2|  892|Caenorhabditis elegans Hypothetical
           protein Y71H9A.1 protein.
          Length = 892

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 664 DFDYIKEYYRYFCFYNIVTYG 602
           D+DY K +Y +FC    + YG
Sbjct: 518 DWDYFKSFYFFFCSLTTIGYG 538


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,122,525
Number of Sequences: 27780
Number of extensions: 330560
Number of successful extensions: 686
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)