Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18a19
         (817 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1 pr...    29   0.13 
DQ383732-1|ABD47743.1|  201|Anopheles gambiae IAP-antagonist mic...    25   3.7  
AJ010195-1|CAA09034.1|  687|Anopheles gambiae prophenoloxidase p...    24   6.4  
AF004916-1|AAB94672.1|  686|Anopheles gambiae pro-phenol oxidase...    24   6.4  

>AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1
           precursor protein.
          Length = 1623

 Score = 29.5 bits (63), Expect = 0.13
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -1

Query: 634 RHAPV*NGQNG-CALQANTAADVCDERAYG 548
           +HA + + + G C  Q NTA D CD+ A G
Sbjct: 731 KHAEICDSETGRCICQHNTAGDTCDQCAKG 760


>DQ383732-1|ABD47743.1|  201|Anopheles gambiae IAP-antagonist
           michelob_x protein.
          Length = 201

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -1

Query: 793 RCVFFSRRRNVDSGGNKMSVQLPRH 719
           RC F+  + + + GG ++ ++ PRH
Sbjct: 178 RC-FYRHKDDEEGGGGRLPIETPRH 201


>AJ010195-1|CAA09034.1|  687|Anopheles gambiae prophenoloxidase
           protein.
          Length = 687

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +3

Query: 252 PDCLS*NR--YSTHILNVHNLNRFRDRP*HRFLDHY 353
           P  LS N   Y  +  ++HNL  F   P +RFL+ Y
Sbjct: 351 PSALSVNSQYYGNYHGHMHNLISFSHDPENRFLEGY 386


>AF004916-1|AAB94672.1|  686|Anopheles gambiae pro-phenol oxidase
           subunit 2 protein.
          Length = 686

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +3

Query: 252 PDCLS*NR--YSTHILNVHNLNRFRDRP*HRFLDHY 353
           P  LS N   Y  +  N+HN+  +   P +RFL+ Y
Sbjct: 350 PSALSVNSQFYGNYHGNLHNIIAYSHDPDNRFLEGY 385


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 910,410
Number of Sequences: 2352
Number of extensions: 20633
Number of successful extensions: 36
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 86487024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)