Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18a17
(426 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Sch... 141 4e-35
SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein L32|Schizosac... 139 1e-34
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 31 0.057
SPAC1250.04c |atl1||alkyltransferase-like protein Atl1|Schizosac... 26 2.8
SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein... 25 3.7
SPBC336.10c |tif512||translation initiation factor|Schizosacchar... 25 4.9
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 25 4.9
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S... 25 4.9
SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos... 25 4.9
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 25 6.5
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa... 24 8.6
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 24 8.6
SPAC1F7.10 |||hydantoin racemase family |Schizosaccharomyces pom... 24 8.6
>SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein
L32|Schizosaccharomyces pombe|chr 1|||Manual
Length = 127
Score = 141 bits (342), Expect = 4e-35
Identities = 63/110 (57%), Positives = 85/110 (77%)
Frame = -2
Query: 332 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLP 153
I+KKRTK F RHQSDR+ ++ +WRKPRGID+ VRRRF+G MP IGYG+NKKTR+ +P
Sbjct: 6 IIKKRTKPFKRHQSDRFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMP 65
Query: 152 NGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 3
NG + LV NV ++E+L+M N+ Y AEIA VS++KR IVE+A+ L ++
Sbjct: 66 NGLKAFLVRNVSDVELLLMHNKTYAAEIAGNVSARKRVEIVEKARALGVK 115
>SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein
L32|Schizosaccharomyces pombe|chr 2|||Manual
Length = 127
Score = 139 bits (337), Expect = 1e-34
Identities = 63/110 (57%), Positives = 84/110 (76%)
Frame = -2
Query: 332 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLP 153
IVKKRTK F RHQSD + ++ +WRKPRGID+ VRRRF+G MP IGYG+NKKTR+ +P
Sbjct: 6 IVKKRTKPFKRHQSDLFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMP 65
Query: 152 NGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 3
NG + LV NV ++E+L+M N+ Y AEIA VS++KR IVE+A+ L ++
Sbjct: 66 NGLKAFLVRNVSDVELLLMHNKTYAAEIASNVSARKRVEIVEKARALGVK 115
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 31.5 bits (68), Expect = 0.057
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Frame = +3
Query: 117 FNIVN*DLTESIWEHMTGLLVGTVTNVGHQVLTLEPPADSVVNTSRF-TPIPLKFV--IA 287
F+I + D+ ++ H+ G+ T G + +T DS + + TP+P+KFV IA
Sbjct: 381 FDIRSPDIVQAYDHHLGGINSITFLENGKRFVTTSD--DSSMRFWEYGTPVPIKFVADIA 438
Query: 288 IRLMPDKSLRP 320
+ MP +LRP
Sbjct: 439 MHSMPRVALRP 449
>SPAC1250.04c |atl1||alkyltransferase-like protein
Atl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 25.8 bits (54), Expect = 2.8
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -1
Query: 381 SKRNIQDGYKTCLQADNRQKEDEEIYQASIG 289
SKR+I G + Q D ++E EIYQ S+G
Sbjct: 67 SKRDISAGEQR--QKDRLEEEGVEIYQTSLG 95
>SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein
Mad3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 310
Score = 25.4 bits (53), Expect = 3.7
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -1
Query: 219 QGSILDAQHWLRFQQEDPSYAPKWIP*GPSS 127
+G + A+ +LRFQQ+ + +W+ P S
Sbjct: 175 KGKRMKAKPFLRFQQKYQQFTHRWLEFAPQS 205
>SPBC336.10c |tif512||translation initiation
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 157
Score = 25.0 bits (52), Expect = 4.9
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = -1
Query: 372 NIQDGYKTCLQADNRQKEDEEIYQASIGS 286
NI DGY + D K+D + + +G+
Sbjct: 95 NIDDGYLNLMTTDGTTKDDVRLPEGELGN 123
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 25.0 bits (52), Expect = 4.9
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -2
Query: 308 FIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 183
F H D YD+L NW++ ++ +RFK NI G
Sbjct: 822 FCVHTRDVYDELVPNWKETYQMEITNVKRFKLIIYQRNIHTG 863
>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
Atm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 693
Score = 25.0 bits (52), Expect = 4.9
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = -2
Query: 293 SDRYDKLKRN-WRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPNGFRKVLVHNVK 117
+ R D++ N RK G+ + F L NIGYG+ K + + +K +H++
Sbjct: 504 NQRLDQITLNSLRKAIGVVPQDTPLFNDTILY-NIGYGNPKASNDEIVEAAKKAKIHDII 562
Query: 116 E 114
E
Sbjct: 563 E 563
>SPAC26H5.10c |tif51||translation initiation factor
eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 25.0 bits (52), Expect = 4.9
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = -1
Query: 372 NIQDGYKTCLQADNRQKEDEEIYQASIGS 286
NI DGY + D K+D + + +G+
Sbjct: 95 NIDDGYLNLMTTDGTTKDDVRLPEGELGN 123
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 24.6 bits (51), Expect = 6.5
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = -2
Query: 341 RPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNI 192
R T VK+R K I+ S+ + KP G R R+ K Y +P +
Sbjct: 540 RETKVKRRRKARIQETSEESTVVNEPNEKPDGRSRRERK--KVNYALPGL 587
>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
Nup132|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1162
Score = 24.2 bits (50), Expect = 8.6
Identities = 7/27 (25%), Positives = 17/27 (62%)
Frame = -2
Query: 152 NGFRKVLVHNVKELEILMMQNRKYCAE 72
N R+ +HN++ ++ L+ Q ++C +
Sbjct: 595 NALREWFLHNIESIDQLIAQAHEFCID 621
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 24.2 bits (50), Expect = 8.6
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +3
Query: 210 LTLEPPADSVVNTSRFTPIPLKFVIAIRLMPDKSLRPLFDDC--RPVN 347
L + P ++ T+RF P+PL ++ ++ SL P + C P+N
Sbjct: 569 LKVPPLVPLLIGTTRFFPVPL---VSSQIAIISSLGPSYSGCFQGPIN 613
>SPAC1F7.10 |||hydantoin racemase family |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 238
Score = 24.2 bits (50), Expect = 8.6
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +3
Query: 306 KSLRPLFDDCRPVNRSYSHLVC 371
+S++ + DDC P N +L C
Sbjct: 17 ESVKSVLDDCTPPNVQLEYLTC 38
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,637,996
Number of Sequences: 5004
Number of extensions: 32023
Number of successful extensions: 102
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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