Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18a17
         (426 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical pr...   152   9e-38
AL132848-1|CAB60388.2|  381|Caenorhabditis elegans Hypothetical ...    29   1.4  
Z71264-2|CAA95830.1| 1202|Caenorhabditis elegans Hypothetical pr...    28   3.2  
U39645-5|AAU05591.1|  345|Caenorhabditis elegans Hypothetical pr...    27   4.3  
U39645-4|AAU05592.1|  341|Caenorhabditis elegans Hypothetical pr...    27   4.3  
Z75712-8|CAB00047.1|  319|Caenorhabditis elegans Hypothetical pr...    27   7.4  
U56864-1|AAB04059.1|  355|Caenorhabditis elegans EGL-30 protein.       27   7.4  
U43375-1|AAA83618.1|  709|Caenorhabditis elegans Sulfatase domai...    27   7.4  
AY008139-1|AAG32092.1|  355|Caenorhabditis elegans heterotrimeri...    27   7.4  
AF003739-2|AAM15593.1|  303|Caenorhabditis elegans Egg laying de...    27   7.4  
AF003739-1|AAB58071.1|  355|Caenorhabditis elegans Egg laying de...    27   7.4  
AC024763-9|AAU20836.1|  404|Caenorhabditis elegans Hypothetical ...    26   9.8  
AC024763-8|AAK93863.1|  480|Caenorhabditis elegans Hypothetical ...    26   9.8  

>Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical
           protein T24B8.1 protein.
          Length = 134

 Score =  152 bits (369), Expect = 9e-38
 Identities = 67/110 (60%), Positives = 91/110 (82%)
 Frame = -2

Query: 332 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLP 153
           +VKK+  +F RH+SDRY ++  +WRKP+GIDNRVRRRF+G   MP IG+GS+++TR +LP
Sbjct: 11  VVKKKLTKFKRHESDRYRRVAPSWRKPKGIDNRVRRRFRGMRAMPTIGHGSDRRTRFVLP 70

Query: 152 NGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 3
           NG++KVLV NVK+L++L+MQ+ KY  EI HGVS+K RK IVERA QL+I+
Sbjct: 71  NGYKKVLVQNVKDLDMLLMQSYKYIGEIGHGVSAKSRKGIVERAAQLNIK 120


>AL132848-1|CAB60388.2|  381|Caenorhabditis elegans Hypothetical
           protein Y47H10A.2 protein.
          Length = 381

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -2

Query: 212 QYLMPNIGYGSNKKTRHMLPNGFRKVLVHNVKELEILMMQN 90
           QYLM NI        R   P+GF K L+  +  L+I   QN
Sbjct: 213 QYLMNNIDLKYGLLIRCWHPSGFDKELLSGIPRLDIFYAQN 253


>Z71264-2|CAA95830.1| 1202|Caenorhabditis elegans Hypothetical protein
            K07G5.3 protein.
          Length = 1202

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
 Frame = +3

Query: 219  EPPADSVVN-TSRFTPIPLKFVIAIRLMPDKSLRPLFDDCRPVNRSYSHLVCFF*KRD-- 389
            E P +S+   T R++ +P  +++ +R+  ++ ++  FD+ R       HLV     R+  
Sbjct: 1058 EEPLESIQTATVRYSKLPEDWIVELRISLEREIKIRFDESRKHAIPQWHLVAARQLREIL 1117

Query: 390  SEPRGDT 410
              PRG T
Sbjct: 1118 ENPRGIT 1124


>U39645-5|AAU05591.1|  345|Caenorhabditis elegans Hypothetical
           protein C14F11.4a protein.
          Length = 345

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = -2

Query: 344 YRPTIVKKRT--KRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKK 171
           Y P + KK    +RFI   ++R+D + RN   P     R  +  + Q L+ +  Y S+ +
Sbjct: 4   YPPLVTKKEIIYRRFIDDHNERFDNIVRN---PTSYPPRAPKPERPQNLVVSHNYHSDVE 60

Query: 170 TRHML 156
             + L
Sbjct: 61  AEYQL 65


>U39645-4|AAU05592.1|  341|Caenorhabditis elegans Hypothetical
           protein C14F11.4b protein.
          Length = 341

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = -2

Query: 344 YRPTIVKKRT--KRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKK 171
           Y P + KK    +RFI   ++R+D + RN   P     R  +  + Q L+ +  Y S+ +
Sbjct: 4   YPPLVTKKEIIYRRFIDDHNERFDNIVRN---PTSYPPRAPKPERPQNLVVSHNYHSDVE 60

Query: 170 TRHML 156
             + L
Sbjct: 61  AEYQL 65


>Z75712-8|CAB00047.1|  319|Caenorhabditis elegans Hypothetical
           protein K04G2.10 protein.
          Length = 319

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -1

Query: 366 QDGYKTCLQADNRQKEDEEIYQASIGSL*QT*EEL 262
           QD  K   + D+RQKE  E Y+  IGS+ +  E++
Sbjct: 238 QDMVKYMEENDDRQKESIEKYKRKIGSMKKVIEKM 272


>U56864-1|AAB04059.1|  355|Caenorhabditis elegans EGL-30 protein.
          Length = 355

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 354 YSHLVCFF*KRDSEPRGDTAARE 422
           YSHL  +F + D  PR   AARE
Sbjct: 281 YSHLADYFPEYDGPPRDPIAARE 303


>U43375-1|AAA83618.1|  709|Caenorhabditis elegans Sulfatase domain
           protein protein 1 protein.
          Length = 709

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = -2

Query: 377 KETYKMAIRPVYRPTIVKKRTKR-FIRHQSDRYDKLKRNWRKPRGIDNRVRRR 222
           K+ +  A++P +R TI+ +R K   ++   DRY K K+ + K   +    +RR
Sbjct: 387 KKKHMTALKP-WRDTILIERGKMPKLKKIRDRYIKQKKKFNKENRLSKECKRR 438


>AY008139-1|AAG32092.1|  355|Caenorhabditis elegans heterotrimeric G
           protein alphasubunit protein.
          Length = 355

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 354 YSHLVCFF*KRDSEPRGDTAARE 422
           YSHL  +F + D  PR   AARE
Sbjct: 281 YSHLADYFPEYDGPPRDPIAARE 303


>AF003739-2|AAM15593.1|  303|Caenorhabditis elegans Egg laying
           defective protein 30,isoform b protein.
          Length = 303

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 354 YSHLVCFF*KRDSEPRGDTAARE 422
           YSHL  +F + D  PR   AARE
Sbjct: 229 YSHLADYFPEYDGPPRDPIAARE 251


>AF003739-1|AAB58071.1|  355|Caenorhabditis elegans Egg laying
           defective protein 30,isoform a protein.
          Length = 355

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 354 YSHLVCFF*KRDSEPRGDTAARE 422
           YSHL  +F + D  PR   AARE
Sbjct: 281 YSHLADYFPEYDGPPRDPIAARE 303


>AC024763-9|AAU20836.1|  404|Caenorhabditis elegans Hypothetical
           protein Y39A3CL.7b protein.
          Length = 404

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -2

Query: 359 AIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRR 225
           A RP  +P   K+R  RF+   S R+++     R P  + +R  R
Sbjct: 295 AERPA-KPNKEKERGDRFLPEPSRRFNRFNHRNRSPPSLSSRTSR 338


>AC024763-8|AAK93863.1|  480|Caenorhabditis elegans Hypothetical
           protein Y39A3CL.7a protein.
          Length = 480

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -2

Query: 359 AIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRR 225
           A RP  +P   K+R  RF+   S R+++     R P  + +R  R
Sbjct: 371 AERPA-KPNKEKERGDRFLPEPSRRFNRFNHRNRSPPSLSSRTSR 414


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,105,554
Number of Sequences: 27780
Number of extensions: 182488
Number of successful extensions: 555
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)