Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18a16
         (711 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0582 + 26369537-26369914,26371598-26371887,26371985-263721...    29   3.6  
01_01_0091 - 719842-720902,721042-721071,721521-722226                 28   8.4  

>04_04_0582 +
           26369537-26369914,26371598-26371887,26371985-26372156,
           26372271-26372393,26372499-26372627,26372785-26372979,
           26373128-26373214,26373296-26373568,26374166-26374273,
           26374363-26374686
          Length = 692

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +2

Query: 320 FIAMICFVNKTSCGFFVLLYISSSTIF*NQLNLYKFTT 433
           F+ +ICF++ T C F V L+   S      LNLY   T
Sbjct: 485 FLVLICFLSGTICYFMVRLHPGFSHYIFFVLNLYASVT 522


>01_01_0091 - 719842-720902,721042-721071,721521-722226
          Length = 598

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = -3

Query: 163 ILSCMTIVPLFKKQSQNCFLKKI*GCQCSTTSRVQNKFKYSKPNQCS 23
           I   + IVPL +  SQ C L+KI     ST+   Q  F+Y+    CS
Sbjct: 71  IYGVINIVPLAESWSQ-CALQKIISANYSTSVYKQYGFQYASLVSCS 116


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,982,976
Number of Sequences: 37544
Number of extensions: 221985
Number of successful extensions: 452
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)