Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18a16
         (711 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    25   0.71 
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    25   0.93 
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    25   0.93 
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   2.9  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   2.9  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   2.9  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   2.9  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   5.0  

>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 258 NSNQVNYKRFYCTG*HKAYH 199
           N N  NYK+ YC    K Y+
Sbjct: 90  NYNNNNYKKLYCNNYRKLYY 109



 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 198 HDKLYVTLYSKIFYNL 245
           + KLY   Y K++YN+
Sbjct: 96  YKKLYCNNYRKLYYNI 111


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 258 NSNQVNYKRFYCTG*HKAYH 199
           N N  NYK+ YC    K Y+
Sbjct: 90  NYNNNNYKKLYCNNYKKLYY 109



 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 198 HDKLYVTLYSKIFYNL 245
           + KLY   Y K++YN+
Sbjct: 96  YKKLYCNNYKKLYYNI 111


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 258 NSNQVNYKRFYCTG*HKAYH 199
           N N  NYK+ YC    K Y+
Sbjct: 90  NYNNNNYKKLYCNNYKKLYY 109



 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 198 HDKLYVTLYSKIFYNL 245
           + KLY   Y K++YN+
Sbjct: 96  YKKLYCNNYKKLYYNI 111


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 492 CCRSWTSAMP 521
           CCRSW S  P
Sbjct: 400 CCRSWLSKFP 409


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 492 CCRSWTSAMP 521
           CCRSW S  P
Sbjct: 400 CCRSWLSKFP 409


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
 Frame = +1

Query: 280 LVLS*FYICYMSMFYCN--DLFC 342
           +VL  F IC++  F CN  D  C
Sbjct: 623 IVLGVFLICWLPFFTCNIMDAIC 645


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +3

Query: 96  IFFK--KQFCDCFLKSGTIVIHDRIHVHVSTLRIT*HDKLYVTLYSK 230
           IFF   +  C   LK   +  HD+  V +S L +    K  +TL SK
Sbjct: 421 IFFAGYQAICKPKLKIADLSAHDKQAVRMSALNVQPTSKGRITLNSK 467


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 126 FLKSGTIVIHDRIH 167
           F++SG +VIH R H
Sbjct: 185 FIQSGQLVIHMRTH 198


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,548
Number of Sequences: 438
Number of extensions: 2916
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)