Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18a15
         (842 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein glycotr...   120   2e-28
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    27   3.3  
SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb...    27   3.3  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   4.4  
SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly prot...    26   5.8  
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    26   7.7  

>SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein
           glycotransferase subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score =  120 bits (290), Expect = 2e-28
 Identities = 64/180 (35%), Positives = 99/180 (55%), Gaps = 8/180 (4%)
 Frame = -3

Query: 654 NKILAIRLTEWVFGERGRLRVRNVDHHRQGEKEPS---SAYTITDTVVYRIEIEELKNGK 484
           N + A  LT WVF  +G L+  N+ + +  E   S   S Y I D +++ I+I  L++G+
Sbjct: 253 NFLFARDLTNWVFQRKGVLQATNMTYGKVAEPLESRNASCYRIKDEMIFSIDISLLEDGQ 312

Query: 483 WQPFEANDVQLEFVRIDPFIRTTLQKKPNGV-----YEAVFKVPDVWGVYQFKVDYDRVG 319
             P+ A+DVQLE + +DP+ R  L   P+       YEAV   PD +G + FK++Y R G
Sbjct: 313 QTPYVADDVQLELIMLDPYYRVNLVPVPSDSQTSQHYEAVLVAPDHYGDFTFKIEYKRPG 372

Query: 318 YTRLYHSTQVSVRPLQHTQYERFIPSAYPYYVSSFSMMIGVFLFSFVFLYYKEDQPKTKS 139
            T +   +  ++R   H ++ RF+P AYPYY S FS++    LF  ++L  K  +P   S
Sbjct: 373 LTPIEEKSTFTLRQFFHNEFPRFLPHAYPYYASCFSVLGAFLLFCGIWLLQKPAKPVVPS 432


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1237

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 665  SDFVLSPCTFVTGELKASSEKKNNDPLKN 751
            +DF+L  C  +  +L  SS   NN+P+++
Sbjct: 1123 TDFLLQECDKIASQLYLSSRMVNNEPVES 1151


>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -3

Query: 429 FIRTTLQKKPNGVYEAVFKVPDVWGVYQFKVDYDRVGYTRLYHSTQVSVR 280
           F+  T+ ++P G +EA+  +     + +F   YD   Y  +Y S  V  R
Sbjct: 426 FLSVTIPERP-GSFEALHNIITPRSITEFSYRYDNDDYANIYTSFVVKDR 474


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = -3

Query: 231 YYVSSFSMMIGVFLFSFVFLYYKEDQPKTKSE*M--KC*FVCNVYLMLNILSQ*VM 70
           Y +S  + +  +FL  F+ L  KED  K     +  +  F+ N Y +LN+L+  V+
Sbjct: 374 YNLSDLADVQAIFLSRFILLRKKEDCKKLLEHVLPIRQLFLLNCYSLLNVLANYVV 429


>SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly protein
           Cbp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 283

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -1

Query: 728 SSLMRPSILLLQKYMVTKQSQMYQATRFSRF 636
           +S ++   L+ QKY+  KQ+  Y+AT  +R+
Sbjct: 74  NSFLKKISLIYQKYISPKQNLYYEATGTARY 104


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 505 NFNSVYNSVCNSIGTGRFLLSLSVMVDIAHA*TPTLTKHP 624
           + ++V  S  +S+ T    +SL+      H+ TPT+  HP
Sbjct: 62  SMSAVATSAASSLPTAENGVSLNAASPTIHSNTPTVVSHP 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,578,787
Number of Sequences: 5004
Number of extensions: 75411
Number of successful extensions: 204
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)