Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18a15
         (842 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0771 + 5917550-5917829,5918390-5918526,5918617-5918742,591...   184   6e-47
05_06_0251 + 26687833-26688120,26689288-26689365,26690499-266905...    31   1.1  
06_01_0065 + 549972-550770,551577-552190,552392-552544,552769-55...    30   2.0  
05_05_0258 - 23656473-23657828                                         29   4.6  
02_05_0135 - 26165263-26165284,26165400-26165458,26165506-261657...    29   4.6  
01_06_0919 - 32993752-32993856,32994383-32994592,32994666-329952...    28   8.1  

>07_01_0771 +
           5917550-5917829,5918390-5918526,5918617-5918742,
           5919168-5919221,5919344-5919457,5919895-5919950,
           5920017-5920058,5920580-5920655,5920765-5920836,
           5920908-5921033,5921117-5921221,5921333-5921416,
           5921636-5921683
          Length = 439

 Score =  184 bits (449), Expect = 6e-47
 Identities = 82/174 (47%), Positives = 113/174 (64%)
 Frame = -3

Query: 684 GDKTKSDVSGNKILAIRLTEWVFGERGRLRVRNVDHHRQGEKEPSSAYTITDTVVYRIEI 505
           G K + + +GN+      ++WVF ERG L+  NV H++ GE      Y I D + Y +EI
Sbjct: 266 GSKIRHEKAGNEQFVTETSKWVFHERGHLKAVNVKHNKVGETNEPGMYRINDDLEYSVEI 325

Query: 504 EELKNGKWQPFEANDVQLEFVRIDPFIRTTLQKKPNGVYEAVFKVPDVWGVYQFKVDYDR 325
            E     W+P+ A+DVQ++F  + P++  TL     GV+   FKVPDV+GV+QFKV+Y R
Sbjct: 326 YEWSGTSWKPYVADDVQVQFYMMSPYVLKTLSTDKKGVFSTSFKVPDVYGVFQFKVEYQR 385

Query: 324 VGYTRLYHSTQVSVRPLQHTQYERFIPSAYPYYVSSFSMMIGVFLFSFVFLYYK 163
           +GYT L  S Q+ VRP +H +YERFI SAYPYY +SFS M   F+FSFV+LY+K
Sbjct: 386 LGYTGLSLSKQIPVRPYRHNEYERFITSAYPYYAASFSTMGAFFIFSFVYLYHK 439


>05_06_0251 +
           26687833-26688120,26689288-26689365,26690499-26690580,
           26691155-26691195,26691973-26692143,26693586-26693813,
           26694237-26694638
          Length = 429

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
 Frame = +2

Query: 599 KRPRSPNTHS--VRRIARILLPDTSDFVLSPCTFVTGELKASSEKKNNDPLKNNTSIVSC 772
           K P+ P   +  ++R   ++ P T    L+   +   E K S +K+  DP+KN TS  SC
Sbjct: 79  KLPQRPKKRAKVIQRTVNLVCPGTWLCDLTLERYEVREKKVS-KKETGDPMKNPTS-DSC 136

Query: 773 LQSCNQYCLTANCMGGTLSPDS 838
            Q+CN  C    C  G +S +S
Sbjct: 137 -QNCNA-CHLQICNYGDVSTES 156


>06_01_0065 +
           549972-550770,551577-552190,552392-552544,552769-552885,
           552972-553076,553269-553334,553430-553494,553577-553778,
           554026-554169,554212-554340
          Length = 797

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
 Frame = -3

Query: 504 EELKNGKW-QPFEANDVQLEFVRIDPFIRTTLQKKPNGVYEAVFKVPDV-W----GVYQF 343
           E  K+  W QP++AN+++   + +D F   T   +P+   E    +PDV W    G+   
Sbjct: 444 ENSKHDWWRQPWDANEIEGLSITMDDFEEATKMVQPSLRREGFSSIPDVTWDDVGGLDSL 503

Query: 342 KVDYDR 325
           + ++DR
Sbjct: 504 RKEFDR 509


>05_05_0258 - 23656473-23657828
          Length = 451

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 330 DRVGYTRLYHSTQVSVRPLQHTQYERFIP 244
           DR    R+ H  +V+V+PLQH  + R +P
Sbjct: 62  DRRTMARVCHDWRVAVKPLQHAPHRRPLP 90


>02_05_0135 -
           26165263-26165284,26165400-26165458,26165506-26165721,
           26166309-26166362,26167029-26167123,26167220-26167317,
           26167413-26167555,26167900-26168031,26168695-26168823,
           26169370-26169831
          Length = 469

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 538 YYRHCCIQN*N*RAKEWQMAAFRSK*CAARVCANRSFYTHNFT 410
           Y RH  ++    R K W++  F S+ CA        FY+ +FT
Sbjct: 165 YVRHMLLRA---RNKGWRVVVFNSRGCAGSPVTTAKFYSASFT 204


>01_06_0919 - 32993752-32993856,32994383-32994592,32994666-32995220,
            32995705-32995926,32996381-32996511,32997456-32998353,
            32998453-32998530,32998612-32998683,32998728-32998763,
            32999413-33000353,33000531-33000659,33000751-33000894,
            33000994-33001060,33002434-33002502,33003144-33003278
          Length = 1263

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 698  TGELKASSEKKNNDPLKNNTSIVSCLQSCNQYCLTAN 808
            T    +S E     P++   S++ CLQSC+  C   N
Sbjct: 938  TSSWMSSLEMAKKLPVERQQSLLVCLQSCSAICALCN 974


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,525,639
Number of Sequences: 37544
Number of extensions: 459229
Number of successful extensions: 1103
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)