Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18a15
         (842 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578810-1|AAT07315.1|  897|Anopheles gambiae smurf protein.           26   1.2  
AY263175-1|AAP78790.1|  814|Anopheles gambiae TmcA-like protein ...    25   3.8  
AJ441131-4|CAD29633.1|  566|Anopheles gambiae putative apyrase/n...    25   3.8  
AJ439398-3|CAD28126.1|  566|Anopheles gambiae putative 5' nucleo...    25   3.8  
AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcript...    24   5.0  
AY070257-1|AAL59656.1|  217|Anopheles gambiae glutathione S-tran...    24   6.7  
AY578800-1|AAT07305.1|  379|Anopheles gambiae decapentaplegic pr...    23   8.8  

>AY578810-1|AAT07315.1|  897|Anopheles gambiae smurf protein.
          Length = 897

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -2

Query: 436 RSFYTHNFTKETQWS 392
           R++Y +++TK TQWS
Sbjct: 176 RTYYVNHYTKTTQWS 190


>AY263175-1|AAP78790.1|  814|Anopheles gambiae TmcA-like protein
           protein.
          Length = 814

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 337 GLRQGRVYKTLSFNTGVSPPTTTHTI 260
           G R+  VY T S  TG++ P   H+I
Sbjct: 14  GRRRSSVYTTSSGETGITLPGDDHSI 39


>AJ441131-4|CAD29633.1|  566|Anopheles gambiae putative
           apyrase/nucleotidase protein.
          Length = 566

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = -3

Query: 321 GYTRL-YHSTQVSVRPLQHTQYERFIPSAYPYYVSSFSMMIGV 196
           GYT    H T V V PL    +ER++    P    +   M+ V
Sbjct: 523 GYTMFGQHRTNVRVGPLDIDVFERYVAKMSPIMQGTDGRMVFV 565


>AJ439398-3|CAD28126.1|  566|Anopheles gambiae putative 5'
           nucleotidase protein.
          Length = 566

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = -3

Query: 321 GYTRL-YHSTQVSVRPLQHTQYERFIPSAYPYYVSSFSMMIGV 196
           GYT    H T V V PL    +ER++    P    +   M+ V
Sbjct: 523 GYTMFGQHRTNVRVGPLDIDVFERYVAKMSPIMQGTDGRMVFV 565


>AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1049

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -2

Query: 484 MAAFRSK*CAARVCANRSFYTHNFTKETQW 395
           +AAF+ K C AR CA  +    N      W
Sbjct: 587 IAAFQRKRCGARYCALITIDVKNAFNSASW 616



 Score = 23.8 bits (49), Expect = 6.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 286 SPPTTTHTI*ALHTERLPILRQFVLN 209
           +PP  + TI    T+ +PI RQ ++N
Sbjct: 436 APPNLSPTINTPETDPVPITRQEIIN 461


>AY070257-1|AAL59656.1|  217|Anopheles gambiae glutathione
           S-transferase e8 protein.
          Length = 217

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -2

Query: 253 LHTERLPILR--QFVLNDDRSVLIFICFPVLQRGST 152
           LHT  +P+LR  +  L D  ++L+++C      G T
Sbjct: 51  LHT--VPVLRHGELTLTDSHAILVYLCDTFAPPGHT 84


>AY578800-1|AAT07305.1|  379|Anopheles gambiae decapentaplegic
           protein.
          Length = 379

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 446 NSSCTSFASKGCHLPFFSSSISILY 520
           NS   + A K C +P   SSIS+LY
Sbjct: 332 NSYNPTLAPKACCVPTQLSSISMLY 356


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 924,488
Number of Sequences: 2352
Number of extensions: 20217
Number of successful extensions: 42
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 89305416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)