Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18a15
         (842 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT010050-1|AAQ22519.1|  449|Drosophila melanogaster LD21941p pro...   254   8e-68
AE014298-1289|AAF46453.1|  449|Drosophila melanogaster CG9022-PA...   254   8e-68
X81999-1|CAA57525.1|  449|Drosophila melanogaster oligosaccharyl...   250   2e-66
X81207-1|CAA57079.1|  330|Drosophila melanogaster oligosaccharyl...   245   5e-65
BT022280-1|AAY54696.1|  361|Drosophila melanogaster IP11380p pro...    33   0.65 
AE014298-2361|AAF48587.2|  355|Drosophila melanogaster CG9915-PA...    33   0.65 
AE014296-1902|ABC66155.1|  158|Drosophila melanogaster CG34012-P...    30   4.6  
BT021241-1|AAX33389.1|  780|Drosophila melanogaster RE67575p pro...    29   8.0  
BT015277-1|AAT94506.1|  742|Drosophila melanogaster LD16684p pro...    29   8.0  

>BT010050-1|AAQ22519.1|  449|Drosophila melanogaster LD21941p
           protein.
          Length = 449

 Score =  254 bits (623), Expect = 8e-68
 Identities = 117/189 (61%), Positives = 150/189 (79%), Gaps = 1/189 (0%)
 Frame = -3

Query: 720 DEAFNSPVTKVHGDKTKSDVSGNKILAIRLTEWVFGERGRLRVRNVDHHRQGEK-EPSSA 544
           DE+F + V           ++GN+ +A  +++WVFGE GRLRV +V HH++GE   P  A
Sbjct: 249 DESFTTAVQYAQSGVFHK-LAGNRDVAESISKWVFGETGRLRVASVQHHKEGELLPPDQA 307

Query: 543 YTITDTVVYRIEIEELKNGKWQPFEANDVQLEFVRIDPFIRTTLQKKPNGVYEAVFKVPD 364
           YTITD VVY I IEEL  G+W+ F+A+D+QLEFVRIDPF+RT L++   G Y+A FK+PD
Sbjct: 308 YTITDPVVYTIGIEELVQGEWRAFKASDIQLEFVRIDPFVRTYLKQTNTGAYQAKFKIPD 367

Query: 363 VWGVYQFKVDYDRVGYTRLYHSTQVSVRPLQHTQYERFIPSAYPYYVSSFSMMIGVFLFS 184
           V+GVYQFKVDY+RVGYT LY +TQVSVRPL+HTQYERFIPSA+PYY S+FSMMIGVF+FS
Sbjct: 368 VYGVYQFKVDYNRVGYTHLYSTTQVSVRPLEHTQYERFIPSAFPYYTSAFSMMIGVFVFS 427

Query: 183 FVFLYYKED 157
           FVFL++K++
Sbjct: 428 FVFLHFKDE 436



 Score = 46.8 bits (106), Expect = 4e-05
 Identities = 21/24 (87%), Positives = 23/24 (95%)
 Frame = -2

Query: 817 PHAVGRKTVLIAALQARNNARIVF 746
           PHAVGR T+LIAALQARNNAR+VF
Sbjct: 217 PHAVGRGTLLIAALQARNNARVVF 240


>AE014298-1289|AAF46453.1|  449|Drosophila melanogaster CG9022-PA
           protein.
          Length = 449

 Score =  254 bits (623), Expect = 8e-68
 Identities = 117/189 (61%), Positives = 150/189 (79%), Gaps = 1/189 (0%)
 Frame = -3

Query: 720 DEAFNSPVTKVHGDKTKSDVSGNKILAIRLTEWVFGERGRLRVRNVDHHRQGEK-EPSSA 544
           DE+F + V           ++GN+ +A  +++WVFGE GRLRV +V HH++GE   P  A
Sbjct: 249 DESFTTAVQYAQSGVFHK-LAGNRDVAESISKWVFGETGRLRVASVQHHKEGELLPPDQA 307

Query: 543 YTITDTVVYRIEIEELKNGKWQPFEANDVQLEFVRIDPFIRTTLQKKPNGVYEAVFKVPD 364
           YTITD VVY I IEEL  G+W+ F+A+D+QLEFVRIDPF+RT L++   G Y+A FK+PD
Sbjct: 308 YTITDPVVYTIGIEELVQGEWRAFKASDIQLEFVRIDPFVRTYLKQTNTGAYQAKFKIPD 367

Query: 363 VWGVYQFKVDYDRVGYTRLYHSTQVSVRPLQHTQYERFIPSAYPYYVSSFSMMIGVFLFS 184
           V+GVYQFKVDY+RVGYT LY +TQVSVRPL+HTQYERFIPSA+PYY S+FSMMIGVF+FS
Sbjct: 368 VYGVYQFKVDYNRVGYTHLYSTTQVSVRPLEHTQYERFIPSAFPYYTSAFSMMIGVFVFS 427

Query: 183 FVFLYYKED 157
           FVFL++K++
Sbjct: 428 FVFLHFKDE 436



 Score = 46.8 bits (106), Expect = 4e-05
 Identities = 21/24 (87%), Positives = 23/24 (95%)
 Frame = -2

Query: 817 PHAVGRKTVLIAALQARNNARIVF 746
           PHAVGR T+LIAALQARNNAR+VF
Sbjct: 217 PHAVGRGTLLIAALQARNNARVVF 240


>X81999-1|CAA57525.1|  449|Drosophila melanogaster
           oligosaccharyltransferase subunit protein.
          Length = 449

 Score =  250 bits (612), Expect = 2e-66
 Identities = 116/189 (61%), Positives = 148/189 (78%), Gaps = 1/189 (0%)
 Frame = -3

Query: 720 DEAFNSPVTKVHGDKTKSDVSGNKILAIRLTEWVFGERGRLRVRNVDHHRQGEK-EPSSA 544
           DE+F + V           ++GN+ +A  +++WVFGE GRL V +V HH++GE   P  A
Sbjct: 249 DESFTTAVQYAQSGVFHK-LAGNRDVAESISKWVFGETGRLVVASVQHHKEGELLPPDQA 307

Query: 543 YTITDTVVYRIEIEELKNGKWQPFEANDVQLEFVRIDPFIRTTLQKKPNGVYEAVFKVPD 364
           YTITD VVY I IEEL  G+W  F+A+D+QLEFVRIDPF+RT L++   G Y+A FK+PD
Sbjct: 308 YTITDPVVYTIGIEELVQGEWARFKASDIQLEFVRIDPFVRTYLKQTNTGAYQAKFKIPD 367

Query: 363 VWGVYQFKVDYDRVGYTRLYHSTQVSVRPLQHTQYERFIPSAYPYYVSSFSMMIGVFLFS 184
           V+GVYQFKVDY+RVGYT LY +TQVSVRPL+HTQYERFIPSA+PYY S+FSMMIGVF+FS
Sbjct: 368 VYGVYQFKVDYNRVGYTHLYSTTQVSVRPLEHTQYERFIPSAFPYYTSAFSMMIGVFVFS 427

Query: 183 FVFLYYKED 157
           FVFL++K++
Sbjct: 428 FVFLHFKDE 436



 Score = 46.8 bits (106), Expect = 4e-05
 Identities = 21/24 (87%), Positives = 23/24 (95%)
 Frame = -2

Query: 817 PHAVGRKTVLIAALQARNNARIVF 746
           PHAVGR T+LIAALQARNNAR+VF
Sbjct: 217 PHAVGRGTLLIAALQARNNARVVF 240


>X81207-1|CAA57079.1|  330|Drosophila melanogaster
           oligosaccharyltransferase 48kDasubunit protein.
          Length = 330

 Score =  245 bits (600), Expect = 5e-65
 Identities = 113/189 (59%), Positives = 149/189 (78%), Gaps = 1/189 (0%)
 Frame = -3

Query: 720 DEAFNSPVTKVHGDKTKSDVSGNKILAIRLTEWVFGERGRLRVRNVDHHRQGEKEPSS-A 544
           DE+F + V           ++GN+ +A  +++WVFGE G++ V +V HH++GE  P+  A
Sbjct: 130 DESFTTAVQYAQSGVFHK-LAGNRDVAESISKWVFGETGQVGVASVQHHKEGELLPTDQA 188

Query: 543 YTITDTVVYRIEIEELKNGKWQPFEANDVQLEFVRIDPFIRTTLQKKPNGVYEAVFKVPD 364
           YTITD VVY I IEEL  G+W+ F+A+ +QLEFVRIDPF+RT L++   G Y+A FK+PD
Sbjct: 189 YTITDPVVYTIGIEELVQGEWRAFKASAIQLEFVRIDPFVRTYLKQTNTGAYQAKFKIPD 248

Query: 363 VWGVYQFKVDYDRVGYTRLYHSTQVSVRPLQHTQYERFIPSAYPYYVSSFSMMIGVFLFS 184
           V+GVYQFKVDY+RVGYT LY +TQVSVRPL+HTQYERFIPSA+PYY S+FSMMIGVF+FS
Sbjct: 249 VYGVYQFKVDYNRVGYTHLYSTTQVSVRPLEHTQYERFIPSAFPYYTSAFSMMIGVFVFS 308

Query: 183 FVFLYYKED 157
           FVFL++K++
Sbjct: 309 FVFLHFKDE 317



 Score = 46.8 bits (106), Expect = 4e-05
 Identities = 21/24 (87%), Positives = 23/24 (95%)
 Frame = -2

Query: 817 PHAVGRKTVLIAALQARNNARIVF 746
           PHAVGR TV+IAALQARNNAR+VF
Sbjct: 98  PHAVGRGTVVIAALQARNNARVVF 121


>BT022280-1|AAY54696.1|  361|Drosophila melanogaster IP11380p
           protein.
          Length = 361

 Score = 32.7 bits (71), Expect = 0.65
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = +2

Query: 641 ARILLPDTSDFVLSPCTFVTGELKASSEKKNN 736
           AR+ +P   D+V+ P + V GE+ AS+++K N
Sbjct: 297 ARVPMPSNKDYVIRPKSTVEGEVSASTKRKPN 328


>AE014298-2361|AAF48587.2|  355|Drosophila melanogaster CG9915-PA
           protein.
          Length = 355

 Score = 32.7 bits (71), Expect = 0.65
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = +2

Query: 641 ARILLPDTSDFVLSPCTFVTGELKASSEKKNN 736
           AR+ +P   D+V+ P + V GE+ AS+++K N
Sbjct: 291 ARVPMPSNKDYVIRPKSTVEGEVSASTKRKPN 322


>AE014296-1902|ABC66155.1|  158|Drosophila melanogaster CG34012-PA
           protein.
          Length = 158

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = -3

Query: 501 ELKNGKWQPFEANDVQLEFVRIDPFIRTTLQKK---PNGVYEAVFKVPDVWGV 352
           ELK G+W  F+A  + +E       + T  +     P   Y  VFK PD  G+
Sbjct: 101 ELKRGRWSQFDAEMLFMESPSTHSLLSTASEDSNVHPVLTYALVFKKPDECGI 153


>BT021241-1|AAX33389.1|  780|Drosophila melanogaster RE67575p
           protein.
          Length = 780

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -3

Query: 717 EAFNSPVTKVHGDKTKSDVSGNKILAIRLTEWVFGERGRLRV 592
           EA+     K H DK K+D    K + I+L   +  +  R R+
Sbjct: 48  EAYKELAKKWHPDKVKNDYGAEKFIQIKLAYEILADLDRRRI 89


>BT015277-1|AAT94506.1|  742|Drosophila melanogaster LD16684p
           protein.
          Length = 742

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -3

Query: 717 EAFNSPVTKVHGDKTKSDVSGNKILAIRLTEWVFGERGRLRV 592
           EA+     K H DK K+D    K + I+L   +  +  R R+
Sbjct: 10  EAYKELAKKWHPDKVKNDYGAEKFIQIKLAYEILADLDRRRI 51


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,754,247
Number of Sequences: 53049
Number of extensions: 820613
Number of successful extensions: 1977
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1973
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4024321392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)